Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15173 Striga asiatica HOM05D002067 ORTHO05D400018 6.5e-91 337.4 175 100.0
SGA_v2.0_scaffold27G11583 Striga asiatica HOM05D000020 ORTHO05D000156 9.9e-15 84.3 45 91.1
SGA_v2.0_scaffold122G33219 Striga asiatica HOM05D002067 ORTHO05D002244 2.5e-10 69.7 45 75.6
SGA_v2.0_scaffold118G32629 Striga asiatica HOM05D000020 ORTHO05D401101 8.1e-09 64.7 38 86.8
Prupe.2G110600 Prunus persica HOM05D002067 ORTHO05D002244 2.0e-07 60.1 40 67.5
Aa31LG1G26130 Aethionema arabicum HOM05D002067 ORTHO05D002244 2.6e-07 59.7 45 62.2
PGSC0003DMG402021921 Solanum tuberosum HOM05D002067 ORTHO05D002244 2.6e-07 59.7 40 67.5
Manes.05G060700 Manihot esculenta HOM05D002067 ORTHO05D002244 4.4e-07 58.9 40 67.5
THA.LOC104817170 Tarenaya hassleriana HOM05D002067 ORTHO05D002244 5.8e-07 58.5 40 67.5
CDE12G0349 Ceratophyllum demersum HOM05D002067 ORTHO05D002244 7.6e-07 58.2 40 67.5
Duzib128G0458 Durio zibethinus HOM05D002067 ORTHO05D002244 7.6e-07 58.2 40 67.5
CAN.G95.13 Capsicum annuum HOM05D002067 ORTHO05D002244 9.9e-07 57.8 40 65.0
COL.COLO4_19348 Corchorus olitorius HOM05D002067 ORTHO05D002244 9.9e-07 57.8 40 65.0
Hund17141 Selenicereus undatus HOM05D002067 ORTHO05D002244 9.9e-07 57.8 40 65.0
Hund26938 Selenicereus undatus HOM05D002067 ORTHO05D002244 9.9e-07 57.8 45 60.0
AL4G43560 Arabidopsis lyrata HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
BcaB06g29385 Brassica carinata HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
BcaC02g07099 Brassica carinata HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
A04p33370 Brassica napus HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
C04p71060 Brassica napus HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
BolC4t28611H Brassica oleracea HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
BraA04t18798Z Brassica rapa HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
CSS0032462 Camellia sinensis var. sinensis HOM05D002067 ORTHO05D002244 1.3e-06 57.4 57 50.9
Carub.0004s2710 Capsella rubella HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
AUR62018760 Chenopodium quinoa HOM05D002067 ORTHO05D002244 1.3e-06 57.4 45 60.0
Thhalv10001479m.g Eutrema salsugineum HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
Sp4g26630 Schrenkiella parvula HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
Solyc10g024410.2 Solanum lycopersicum HOM05D002067 ORTHO05D002244 1.3e-06 57.4 40 65.0
Actinidia05802 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Aqoxy3G02481 Aquilegia oxysepala HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
CARHR139750 Cardamine hirsuta HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.7e-06 57.0 40 65.0
CiPaw.13G020600 Carya illinoinensis HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
CiPaw.14G014500 Carya illinoinensis HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Haze_02936 Corylus avellana HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Dinv43569 Davidia involucrata HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
FvH4_7g07890 Fragaria vesca HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
FAN06G4175 Fragaria x ananassa HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
FAN10G0440 Fragaria x ananassa HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Glyma.03G100800 Glycine max HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Hma1.2p1_0021F.1_g014410 Hydrangea macrophylla HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Lj7A554T14 Lonicera japonica HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Nn1g00591 Nelumbo nucifera HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Oeu034865.1 Olea europaea HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
PGR042G0404 Punica granatum HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
QL04p024938 Quercus lobata HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
Rhsim07G0040600 Rhododendron simsii HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
RhsimUnG0113700 Rhododendron simsii HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
RcHm_v2.0_Chr1g0341521 Rosa chinensis HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
SGA_v2.0_scaffold578G53023 Striga asiatica HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
TWI14G0205 Tripterygium wilfordii HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
vmacro13552 Vaccinium macrocarpon HOM05D002067 ORTHO05D002244 1.7e-06 57.0 40 65.0
GSVIVG01013241001 Vitis vinifera HOM05D002067 ORTHO05D002244 1.7e-06 57.0 55 54.5
Cc02_g25840 Coffea canephora HOM05D002067 ORTHO05D002244 2.2e-06 56.6 40 62.5
Migut.B01468 Erythranthe guttata HOM05D002067 ORTHO05D002244 2.2e-06 56.6 65 49.2
Os06g0617800 Oryza sativa ssp. japonica HOM05D002067 ORTHO05D002244 2.2e-06 56.6 40 67.5
Sc02g0003330 Simmondsia chinensis HOM05D002067 ORTHO05D002244 2.2e-06 56.6 40 62.5
Solyc08g077200.4 Solanum lycopersicum HOM05D002067 ORTHO05D002244 2.2e-06 56.6 45 62.2
Sopen08g025760 Solanum pennellii HOM05D002067 ORTHO05D002244 2.2e-06 56.6 45 62.2
PGSC0003DMG400024226 Solanum tuberosum HOM05D002067 ORTHO05D002244 2.2e-06 56.6 45 62.2
SGA_v2.0_scaffold340G49294 Striga asiatica HOM05D002067 ORTHO05D002244 2.2e-06 56.6 40 65.0
Thecc.10G000700 Theobroma cacao HOM05D002067 ORTHO05D002244 2.2e-06 56.6 40 62.5
AT2G44530 Arabidopsis thaliana HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 62.5
BcaB02g09433 Brassica carinata HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
BcaC02g11646 Brassica carinata HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
A05p10330 Brassica napus HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
C04p12770 Brassica napus HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
BolC4t22923H Brassica oleracea HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
BraA05t19971Z Brassica rapa HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
CDE07G1668 Ceratophyllum demersum HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
Ciclev10031694m.g Citrus clementina HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
Gohir.A05G333600 Gossypium hirsutum HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 62.5
Gorai.012G081900 Gossypium raimondii HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 62.5
Lj3g0019900 Lotus japonicus HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 62.5
Lalb_Chr07g0194941 Lupinus albus HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 62.5
Os02g0127700 Oryza sativa ssp. japonica HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
Phvul.010G040300 Phaseolus vulgaris HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
SEGI_35184 Sequoiadendron giganteum HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 62.5
Sopen10g009520 Solanum pennellii HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
SGA_v2.0_scaffold7G04180 Striga asiatica HOM05D002067 ORTHO05D002244 2.9e-06 56.2 39 64.1
TPR.G17378 Trifolium pratense HOM05D002067 ORTHO05D002244 2.9e-06 56.2 58 46.6
VMungo0331G0177 Vigna mungo HOM05D002067 ORTHO05D002244 2.9e-06 56.2 40 65.0
Zm00001eb388190 Zea mays HOM05D002067 ORTHO05D002244 2.9e-06 56.2 45 57.8
Atru.chr6.1765 Acer truncatum HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 65.0
Actinidia30968 Actinidia chinensis HOM05D002067 ORTHO05D002244 3.8e-06 55.8 37 67.6
arahy.Tifrunner.gnm1.ann1.2P4BKG Arachis hypogaea HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
arahy.Tifrunner.gnm1.ann1.FC0NGR Arachis hypogaea HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
DCAR_015765 Daucus carota HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
FAN01G1909 Fragaria x ananassa HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
FAN03G2232 Fragaria x ananassa HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
Glyma.07G122000 Glycine max HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 65.0
MD02G1228700 Malus domestica HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
Medtr8g009660 Medicago truncatula HOM05D002067 ORTHO05D002244 3.8e-06 55.8 58 46.6
Sed0005770 Sechium edule HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 65.0
TAR374G0221 Trochodendron aralioides HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
HPP92_002976 Vanilla planifolia HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 62.5
Zm00001eb231020 Zea mays HOM05D002067 ORTHO05D002244 3.8e-06 55.8 40 65.0
Atru.chr1.2082 Acer truncatum HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
ATR0049G034 Amborella trichopoda HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
AL4G31440 Arabidopsis lyrata HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 65.0
CANSAT25G1926 Cannabis sativa HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
Eucgr.E01722 Eucalyptus grandis HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
MBI04_g32787_MAGBIO Magnolia biondii HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 60.0
MD07G1084000 Malus domestica HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
Mapoly0124s0046 Marchantia polymorpha HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
Psat4g216520 Pisum sativum HOM05D002067 ORTHO05D002244 4.9e-06 55.5 58 46.6
Potri.014G179600 Populus trichocarpa HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
Hund14423 Selenicereus undatus HOM05D002067 ORTHO05D002244 4.9e-06 55.5 45 57.8
TAR629G2578 Trochodendron aralioides HOM05D002067 ORTHO05D002244 4.9e-06 55.5 40 62.5
MSTRG.17097 Avicennia marina HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
CAN.G799.6 Capsicum annuum HOM05D002067 ORTHO05D002244 6.4e-06 55.1 45 60.0
AUR62013809 Chenopodium quinoa HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 60.0
AUR62023348 Chenopodium quinoa HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 60.0
Dinv25191 Davidia involucrata HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
Gohir.A03G144600 Gossypium hirsutum HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
Gohir.A12G209900 Gossypium hirsutum HOM05D002067 ORTHO05D002244 6.4e-06 55.1 45 57.8
Gohir.D12G212600 Gossypium hirsutum HOM05D002067 ORTHO05D002244 6.4e-06 55.1 45 57.8
Gorai.008G228200 Gossypium raimondii HOM05D002067 ORTHO05D002244 6.4e-06 55.1 45 57.8
Hma1.2p1_0414F.1_g147860 Hydrangea macrophylla HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
Nitab4.5_0003100g0070 Nicotiana tabacum HOM05D002067 ORTHO05D002244 6.4e-06 55.1 45 55.6
Os03g0100040 Oryza sativa ssp. japonica HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 60.0
Sabra14G0138000 Salix brachista HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
Sabra14G0140100 Salix brachista HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
SEGI_00278 Sequoiadendron giganteum HOM05D002067 ORTHO05D002244 6.4e-06 55.1 45 57.8
THA.LOC104812752 Tarenaya hassleriana HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 65.0
HPP92_014965 Vanilla planifolia HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
GSVIVG01018382001 Vitis vinifera HOM05D002067 ORTHO05D002244 6.4e-06 55.1 40 62.5
Ah.12g054520 Amaranthus hybridus HOM05D002067 ORTHO05D002244 8.4e-06 54.7 45 57.8
EL10Ac5g12179 Beta vulgaris HOM05D002067 ORTHO05D002244 8.4e-06 54.7 45 57.8
CSS0018980 Camellia sinensis var. sinensis HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 60.0
CSS0032095 Camellia sinensis var. sinensis HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 60.0
CARHR129550 Cardamine hirsuta HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5
Cfa012395 Carpinus fangiana HOM05D002067 ORTHO05D002244 8.4e-06 54.7 45 57.8
Cre08.g378850 Chlamydomonas reinhardtii HOM05D002067 ORTHO05D002244 8.4e-06 54.7 45 55.6
Ciclev10031791m.g Citrus clementina HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 60.0
Haze_08289 Corylus avellana HOM05D002067 ORTHO05D002244 8.4e-06 54.7 45 57.8
Gohir.D04G072900 Gossypium hirsutum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 60.0
Gohir.D08G179400 Gossypium hirsutum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 65.0
Gorai.004G187900 Gossypium raimondii HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 65.0
Nn6g33645 Nelumbo nucifera HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5
Nitab4.5_0000166g0110 Nicotiana tabacum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5
Nitab4.5_0000765g0070 Nicotiana tabacum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5
PSO339G0442 Papaver somniferum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 57.5
PSO384G0771 Papaver somniferum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 57.5
PSO675G1913 Papaver somniferum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5
PSO732G0620 Papaver somniferum HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5
TAR371G0893 Trochodendron aralioides HOM05D002067 ORTHO05D002244 8.4e-06 54.7 40 62.5


User provided reference genes

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