Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 3.7e-197 691.4 364 100.0
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.0e-138 497.3 363 71.1
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 3.3e-137 492.3 364 74.2
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.2e-126 457.2 339 71.4
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 4.0e-119 432.2 383 65.3
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.0e-119 432.2 371 66.3
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.8e-111 406.8 361 63.7
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 3.1e-111 406.0 372 62.1
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 4.0e-111 405.6 282 74.1
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.5e-110 403.7 346 66.2
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.0e-110 403.3 396 60.9
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 3.4e-110 402.5 384 61.5
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 4.4e-110 402.1 352 62.5
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 9.9e-110 401.0 370 62.4
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 8.4e-109 397.9 380 60.5
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.4e-108 397.1 357 61.9
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 9.3e-108 394.4 346 63.0
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 9.3e-108 394.4 342 62.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.9e-106 389.0 342 63.5
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 6.6e-106 388.3 298 69.1
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 6.6e-106 388.3 345 63.2
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.7e-106 387.9 339 61.7
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.9e-105 386.7 346 61.8
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.9e-105 386.7 346 61.8
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.3e-105 385.6 279 71.3
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 2.1e-104 383.3 380 60.8
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 9.0e-103 377.9 375 58.1
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 9.0e-103 377.9 345 61.4
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.6e-102 376.3 329 63.8
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 4.5e-102 375.6 278 71.2
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 7.6e-102 374.8 346 59.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.7e-101 373.6 250 76.4
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 2.2e-101 373.2 373 58.2
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 3.8e-101 372.5 268 70.9
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 4.9e-101 372.1 356 59.0
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 6.4e-101 371.7 364 59.3
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 8.4e-101 371.3 248 76.2
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.4e-100 370.5 354 61.0
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.9e-100 370.2 326 63.2
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 7.1e-100 368.2 338 59.2
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 9.3e-100 367.9 293 67.2
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.6e-99 367.1 296 65.5
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-99 366.7 271 69.7
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.7e-99 366.3 264 69.7
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 2.7e-99 366.3 296 65.2
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 6.0e-99 365.2 268 69.0
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 6.0e-99 365.2 380 56.1
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.3e-98 364.0 362 58.8
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.3e-98 363.2 293 64.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 2.3e-98 363.2 293 64.5
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 2.3e-98 363.2 288 66.7
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.9e-98 362.5 248 72.2
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 3.9e-98 362.5 275 69.5
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.1e-98 362.1 359 58.5
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.7e-98 361.7 360 57.2
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 8.7e-98 361.3 260 70.4
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 8.7e-98 361.3 326 63.2
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.1e-97 360.9 287 66.2
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.1e-97 360.9 251 73.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.9e-97 360.1 286 67.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.9e-97 360.1 412 55.1
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.9e-97 360.1 340 59.1
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.5e-97 359.8 252 72.6
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.3e-97 359.4 256 70.7
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.3e-97 359.0 249 71.1
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 5.6e-97 358.6 250 73.2
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 9.6e-97 357.8 338 61.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.3e-96 357.5 355 58.3
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.6e-96 357.1 306 62.4
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.6e-96 357.1 276 68.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.8e-96 356.3 320 61.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.8e-96 356.3 363 57.9
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.8e-96 356.3 257 70.0
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 3.7e-96 355.9 361 56.2
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.7e-96 355.9 251 72.1
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 4.8e-96 355.5 282 67.0
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 4.8e-96 355.5 282 67.0
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 4.8e-96 355.5 335 59.4
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.8e-96 355.5 254 71.3
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 6.2e-96 355.1 356 57.9
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-95 354.0 356 57.0
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 1.4e-95 354.0 356 57.0
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.4e-95 354.0 304 64.5
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.4e-95 354.0 351 58.7
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.8e-95 353.6 249 70.7
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.4e-95 353.2 382 53.9
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 3.1e-95 352.8 322 63.4
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.0e-95 352.4 356 56.5
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 4.0e-95 352.4 354 57.9
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 6.9e-95 351.7 245 73.1
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 6.9e-95 351.7 261 68.6
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.2e-94 350.9 355 57.5
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.5e-94 350.5 263 71.5
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.6e-94 348.2 249 69.9
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.3e-93 347.4 250 71.2
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 2.9e-93 346.3 257 69.6
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.9e-93 346.3 338 57.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.9e-93 346.3 215 78.1
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.9e-93 346.3 338 57.1
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 1.9e-92 343.6 319 60.5
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.2e-92 342.8 317 59.0
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 5.5e-92 342.0 201 84.6
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 7.9e-91 338.2 226 73.0
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.3e-90 336.7 284 64.4
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.3e-90 336.7 284 63.7
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 3.0e-90 336.3 373 54.4
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.9e-89 333.6 328 58.8
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.6e-86 323.2 250 64.4
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.2e-84 316.2 240 70.0
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.1e-83 312.0 259 62.5
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 7.9e-83 311.6 229 66.8
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.0e-82 311.2 260 60.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.8e-80 303.1 176 84.7
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 2.4e-79 300.1 179 82.1
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.5e-78 295.8 179 82.1
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.9e-76 290.4 287 60.6
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.4e-76 288.1 245 58.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.6e-75 287.3 244 58.6
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 2.7e-75 286.6 348 51.4
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.3e-74 283.5 192 78.6
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 8.8e-74 281.6 367 49.6
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 2.8e-72 276.6 219 62.1
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.9e-68 263.8 348 50.6
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.1e-65 254.6 277 54.2
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.2e-64 250.4 158 80.4
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.1e-63 248.1 154 78.6
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 2.4e-63 246.9 153 79.7
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 7.4e-57 225.3 154 72.1
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 9.4e-52 208.4 394 41.9
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.6e-51 206.5 226 46.0
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.4e-50 204.5 226 45.6
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 2.6e-49 200.3 129 78.3
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 4.4e-49 199.5 129 78.3
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 2.2e-48 197.2 129 77.5
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-48 197.2 129 77.5
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 3.7e-48 196.4 129 76.7
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 3.7e-48 196.4 129 76.7
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 2.1e-43 180.6 112 77.7
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 6.1e-43 179.1 250 45.2
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-42 178.3 112 76.8
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 6.8e-42 175.6 355 38.9
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-41 174.9 112 75.9
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 9.8e-41 171.8 261 38.3
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 5.4e-39 166.0 251 39.4
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-38 163.7 102 76.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.7e-38 163.7 102 76.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 1.7e-37 161.0 103 81.6
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-37 160.6 101 83.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 3.3e-36 156.8 101 81.2
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 8.0e-35 152.1 91 81.3
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.4e-34 151.4 163 55.2
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.1e-31 139.8 141 57.4
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 5.0e-29 132.9 110 61.8
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.9e-24 117.1 183 45.4
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.9e-24 116.3 96 61.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.1e-23 115.2 111 55.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.2e-23 113.6 182 42.9
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-20 104.8 63 81.0
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 2.5e-20 104.0 77 71.4
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.3e-20 102.4 63 76.2
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-19 101.7 88 58.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 1.6e-19 101.3 84 61.9
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 6.2e-19 99.4 87 52.9
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.5e-17 94.7 93 51.6
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.0e-17 94.4 348 25.6
Oeu044180.2 Olea europaea HOM05D060731 ORTHO05D049468 1.9e-15 87.8 153 43.1
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.6e-14 84.7 44 93.2
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.1e-12 78.6 52 71.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-12 78.2 71 59.2
Oeu008102.1 Olea europaea HOM05D060731 ORTHO05D049468 7.6e-09 65.9 155 37.4


User provided reference genes

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