Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 0.0e+00 1323.1 655 100.0
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.4e-138 496.9 402 62.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.6e-134 483.0 394 59.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.7e-133 478.8 395 60.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.8e-133 478.4 395 61.0
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.5e-132 477.6 428 58.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.0e-132 477.2 395 59.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 8.5e-128 461.8 420 56.4
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 9.4e-127 458.4 391 56.0
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.6e-121 441.0 406 54.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.3e-120 438.0 406 53.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.9e-120 436.8 402 55.2
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.5e-119 434.5 396 54.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-118 431.4 405 53.3
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 7.5e-116 422.2 400 52.2
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.8e-115 420.2 406 53.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.7e-115 419.9 386 52.6
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 8.3e-115 418.7 413 52.5
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.1e-114 418.3 401 52.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.4e-114 417.9 406 52.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.7e-113 413.7 527 44.4
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-112 411.8 406 51.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.3e-112 411.4 400 51.0
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.9e-112 410.2 401 50.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.8e-112 409.8 401 52.1
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 8.5e-112 408.7 394 50.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 8.5e-112 408.7 396 51.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.5e-111 407.9 400 50.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.2e-111 406.8 412 50.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 5.5e-111 406.0 402 52.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.2e-110 404.8 402 51.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.6e-110 404.4 410 50.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.7e-110 403.7 458 47.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.6e-110 403.3 402 51.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 4.0e-109 399.8 395 51.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 5.2e-109 399.4 401 50.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.6e-108 397.1 412 49.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.6e-108 397.1 412 49.0
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.3e-107 392.5 420 49.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.1e-106 391.7 407 49.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.8e-106 391.0 405 49.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.1e-106 390.2 405 48.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.1e-106 389.8 400 50.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.2e-106 388.7 468 44.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.5e-105 386.7 395 48.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.7e-105 385.6 396 49.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 7.7e-105 385.6 400 49.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.7e-104 384.4 398 49.0
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.8e-104 383.3 398 48.7
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.6e-103 379.4 396 50.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 7.3e-103 379.0 396 48.2
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.6e-102 377.9 396 50.0
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.6e-102 376.7 392 49.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.7e-102 376.3 380 50.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 3.0e-101 373.6 397 47.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.8e-101 372.5 393 49.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-100 371.7 415 47.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.5e-100 371.3 415 47.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.6e-100 370.5 407 46.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.6e-100 370.5 394 46.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.4e-100 369.8 395 48.1
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 9.8e-100 368.6 393 49.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.2e-99 367.5 387 49.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.9e-99 367.1 391 48.6
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.9e-99 366.3 425 45.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.1e-98 365.2 410 46.1
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.8e-98 364.4 406 47.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 7.0e-98 362.5 406 45.3
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.2e-97 361.7 395 47.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.8e-97 359.0 405 46.9
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.0e-96 357.1 403 46.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.0e-96 357.1 406 46.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.5e-95 354.0 397 47.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 9.5e-95 352.1 395 47.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.6e-94 350.1 395 45.3
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 6.2e-94 349.4 390 46.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.8e-93 347.8 404 46.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.6e-92 344.0 396 45.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 9.8e-92 342.0 404 44.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.9e-90 337.8 396 44.7
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.5e-89 333.6 393 45.0
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.6e-88 329.3 410 41.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 8.6e-88 328.9 395 46.3
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-87 328.2 414 43.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.5e-87 328.2 407 45.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-87 328.2 465 41.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.9e-87 327.8 411 43.1
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.5e-87 327.4 391 44.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.3e-87 327.0 403 41.2
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.3e-87 326.6 409 42.5
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.1e-86 324.3 410 42.7
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.4e-85 321.6 403 41.9
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 4.0e-85 320.1 417 41.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.0e-85 320.1 404 41.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.0e-85 320.1 441 42.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.6e-84 317.4 408 40.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.4e-84 317.0 400 42.5
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.3e-83 315.1 400 44.2
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.7e-83 314.7 404 41.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.2e-83 314.3 394 43.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.1e-82 312.0 398 43.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-82 311.6 404 40.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.4e-82 310.8 404 40.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.4e-82 310.8 400 42.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.1e-82 310.1 394 43.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.1e-82 310.1 402 43.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.1e-82 310.1 395 44.6
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-81 308.5 404 40.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-81 308.1 394 43.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 7.8e-81 305.8 405 41.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.0e-80 305.4 395 41.3
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.3e-80 305.1 406 39.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.3e-80 304.3 407 39.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.9e-80 303.5 407 39.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.9e-80 303.5 407 39.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-79 302.0 400 42.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.1e-79 302.0 400 41.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.9e-79 301.2 401 41.6
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.5e-79 300.8 400 42.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.6e-79 299.7 400 41.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.3e-79 299.3 401 40.1
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.4e-76 290.0 406 40.1
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.3e-75 288.5 414 41.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.7e-75 288.1 400 39.2
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 8.4e-75 285.8 417 40.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.1e-74 285.4 410 40.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.9e-74 284.6 322 46.6
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 6.9e-69 266.2 363 42.1
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 8.9e-69 265.8 396 40.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-68 265.4 444 36.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.6e-68 264.2 449 36.5
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 9.9e-68 262.3 457 33.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-63 248.4 394 38.3
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.0e-56 224.2 411 33.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 5.5e-42 176.8 400 31.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.2e-41 175.6 116 66.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-39 169.1 381 31.2
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.1e-38 164.9 428 27.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.8e-38 164.5 123 61.0
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 8.2e-38 162.9 245 38.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 6.5e-35 153.3 433 26.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 6.5e-35 153.3 201 41.3
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.1e-33 148.3 408 28.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.6e-28 131.3 134 48.5
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 9.4e-26 122.9 141 42.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.2e-25 122.5 177 36.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 6.1e-25 120.2 65 78.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 6.7e-24 116.7 156 37.8
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 6.3e-22 110.2 271 29.5
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 5.9e-20 103.6 256 32.8
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.2e-18 97.8 253 31.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.5e-18 97.1 187 32.1
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-16 91.3 143 36.4
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.4e-15 86.7 204 31.4
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 5.3e-13 80.5 234 27.4
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.0e-12 78.6 55 63.6
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.0e-12 78.6 114 36.8
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-08 65.9 55 54.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.8e-08 65.5 89 33.7
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 8.2e-06 56.6 59 57.6


User provided reference genes

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