Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.5e-120 434.9 206 100.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 3.4e-59 232.3 139 74.8
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 4.5e-59 231.9 139 77.0
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.7e-59 231.1 150 73.3
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.0e-58 230.7 150 74.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.0e-58 230.7 137 75.2
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-58 230.3 139 75.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-58 229.9 139 76.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.2e-58 229.6 146 71.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.8e-58 228.8 137 76.6
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.0e-58 228.4 137 75.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 5.0e-58 228.4 150 71.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 8.5e-58 227.6 152 71.7
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.5e-58 227.6 150 72.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.5e-58 227.6 137 76.6
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.4e-57 226.9 139 75.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.9e-57 226.5 149 70.5
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.5e-57 226.1 137 75.9
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.2e-57 225.7 137 75.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.2e-57 225.7 154 68.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-57 225.7 139 74.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.5e-57 224.9 139 73.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.5e-57 224.9 148 67.6
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 7.2e-57 224.6 139 73.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.1e-56 223.0 149 68.5
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.1e-56 223.0 139 74.1
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-56 222.6 155 67.7
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.7e-56 222.6 139 71.2
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.6e-56 222.2 146 69.9
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.7e-56 221.9 139 71.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.1e-56 221.5 137 72.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 6.1e-56 221.5 139 73.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 6.1e-56 221.5 139 72.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.1e-56 221.5 146 69.9
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 7.9e-56 221.1 139 71.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.9e-56 221.1 137 72.3
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 7.9e-56 221.1 138 72.5
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 7.9e-56 221.1 148 69.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-55 219.9 137 73.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-55 219.9 137 73.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.0e-55 219.2 139 70.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.9e-55 218.8 139 71.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-55 218.8 155 67.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.9e-55 218.8 148 67.6
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.9e-55 218.8 146 68.5
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 5.2e-55 218.4 139 71.2
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 5.2e-55 218.4 137 69.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 5.2e-55 218.4 148 67.6
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 8.8e-55 217.6 139 71.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 8.8e-55 217.6 141 71.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 8.8e-55 217.6 139 71.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.1e-54 217.2 148 67.6
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.1e-54 217.2 139 71.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.5e-54 216.9 146 68.5
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.0e-54 216.5 139 71.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 3.3e-54 215.7 137 69.3
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 5.7e-54 214.9 139 71.9
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.7e-54 214.9 137 69.3
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.4e-54 214.5 146 65.8
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.4e-54 214.5 150 68.0
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.4e-54 214.5 139 70.5
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 7.4e-54 214.5 146 68.5
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.7e-54 214.2 148 66.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.7e-54 214.2 150 68.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.7e-54 214.2 150 68.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.7e-54 214.2 150 68.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.3e-53 213.8 137 70.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.3e-53 213.8 137 68.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-53 213.4 146 69.2
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.7e-53 213.4 137 71.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.8e-53 212.6 149 67.8
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.8e-53 212.6 137 69.3
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.8e-53 212.6 148 65.5
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 3.7e-53 212.2 149 67.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 4.8e-53 211.8 139 69.8
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 6.3e-53 211.5 139 66.9
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 6.3e-53 211.5 139 69.1
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.3e-53 211.5 137 68.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.2e-53 211.1 139 68.3
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 8.2e-53 211.1 127 74.0
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 8.2e-53 211.1 140 70.0
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-52 210.3 139 66.9
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.4e-52 210.3 136 69.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.4e-52 210.3 139 69.1
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-52 209.9 139 67.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-52 209.9 137 67.9
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.8e-52 209.9 139 66.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.8e-52 209.9 139 67.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.8e-52 209.9 139 66.9
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.8e-52 209.9 139 68.3
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.4e-52 209.5 146 63.0
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.4e-52 209.5 128 72.7
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.1e-52 209.1 148 64.2
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.1e-52 209.1 150 66.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.1e-52 209.1 136 69.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.1e-52 209.1 153 64.1
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.3e-52 208.4 146 63.0
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.3e-52 208.4 139 64.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 9.1e-52 207.6 150 66.0
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 9.1e-52 207.6 139 66.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-51 207.2 139 66.2
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.6e-51 206.8 144 64.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.6e-51 206.1 137 65.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.6e-51 206.1 139 64.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.6e-51 206.1 150 64.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.6e-51 206.1 137 68.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-51 206.1 139 68.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.5e-51 205.7 146 63.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.5e-51 205.3 137 65.7
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.5e-51 205.3 141 64.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 4.5e-51 205.3 137 67.2
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.5e-51 205.3 139 66.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.5e-51 205.3 137 62.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.5e-51 205.3 148 64.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-51 204.9 146 63.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-51 204.9 146 63.0
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.9e-51 204.9 137 68.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-50 203.8 142 64.8
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-50 203.0 150 62.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 8.5e-50 201.1 137 65.0
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 8.5e-50 201.1 137 64.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-49 200.3 137 67.2
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.5e-49 198.4 137 62.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.5e-49 198.4 150 62.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.6e-48 196.8 137 62.8
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.0e-47 194.1 137 62.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.8e-47 193.4 137 63.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.0e-47 192.6 148 60.8
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 8.8e-47 191.0 137 64.2
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.7e-45 186.8 137 62.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.9e-43 178.3 146 56.2
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.8e-42 175.6 109 72.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.5e-41 173.7 148 54.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.3e-37 160.6 108 65.7
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 8.3e-37 157.9 132 56.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 5.0e-34 148.7 113 58.4
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.5e-33 147.1 135 51.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.9e-33 146.7 135 48.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.2e-33 145.6 137 52.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.7e-29 133.7 137 47.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.3e-25 119.4 154 44.2
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.0e-23 112.5 148 43.2
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.3e-21 104.8 72 62.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-15 87.8 145 35.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.7e-13 79.3 64 57.8
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.5e-11 72.8 35 85.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.9e-10 69.3 37 75.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.5e-09 67.4 37 75.7


User provided reference genes

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