Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 5.9e-76 287.3 134 100.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.0e-52 209.1 120 76.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.7e-52 208.8 120 76.7
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.5e-51 203.8 124 72.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.5e-51 203.8 134 68.7
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.1e-50 203.4 127 72.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.5e-50 203.0 135 67.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.5e-50 202.2 131 67.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.5e-50 201.1 131 64.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 7.2e-50 200.7 121 71.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.7e-49 198.7 134 67.9
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.7e-49 198.7 121 71.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.7e-49 198.0 130 62.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.0e-48 196.8 120 68.3
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.8e-48 196.1 121 69.4
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.8e-48 196.1 122 66.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.0e-48 194.9 120 67.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.0e-48 194.9 119 68.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.0e-48 194.9 130 66.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 5.2e-48 194.5 123 65.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 8.8e-48 193.7 131 64.9
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 8.8e-48 193.7 141 61.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 8.8e-48 193.7 122 68.9
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.2e-47 193.4 121 71.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.2e-47 193.4 122 67.2
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.0e-47 192.6 121 70.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.0e-47 192.6 119 70.6
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.6e-47 192.2 119 67.2
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-47 191.8 131 62.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.4e-47 191.8 123 67.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.4e-47 191.4 133 63.2
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.4e-47 191.4 127 65.4
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.7e-47 191.0 121 68.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 5.7e-47 191.0 121 67.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 7.5e-47 190.7 119 70.6
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.5e-47 190.7 126 66.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 9.8e-47 190.3 121 70.2
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.7e-46 189.5 119 65.5
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-46 189.5 119 67.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.7e-46 189.5 121 69.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.7e-46 189.5 128 62.5
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.2e-46 189.1 121 67.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.2e-46 189.1 125 65.6
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.2e-46 189.1 125 65.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.8e-46 188.7 127 63.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.7e-46 188.3 132 61.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.7e-46 188.3 119 67.2
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.7e-46 188.3 121 66.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.9e-46 188.0 121 66.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 6.3e-46 187.6 120 66.7
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 6.3e-46 187.6 119 69.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-45 186.8 121 66.1
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.4e-45 186.4 123 68.3
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.4e-45 186.4 119 65.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.8e-45 186.0 119 67.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.4e-45 185.7 120 65.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 3.1e-45 185.3 120 65.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 3.1e-45 185.3 120 65.8
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 4.1e-45 184.9 121 67.8
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.4e-45 184.5 119 64.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.4e-45 184.5 119 67.2
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.0e-45 184.1 119 67.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.0e-45 184.1 119 64.7
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.0e-45 184.1 119 64.7
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-44 183.3 119 66.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.2e-44 183.3 125 65.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.2e-44 183.3 115 67.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.2e-44 183.3 116 69.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.2e-44 183.3 130 60.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.6e-44 183.0 123 65.9
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.6e-44 183.0 123 65.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.5e-44 181.8 126 62.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.5e-44 181.8 131 61.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.5e-44 181.8 119 64.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.5e-44 181.4 123 62.6
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 4.5e-44 181.4 123 62.6
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 5.9e-44 181.0 119 65.5
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 5.9e-44 181.0 119 63.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.7e-44 180.6 119 66.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.0e-43 180.3 121 65.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.3e-43 179.9 127 61.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.3e-43 179.1 130 60.8
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.3e-43 179.1 120 64.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.9e-43 178.7 131 60.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.8e-43 178.3 120 61.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 6.6e-43 177.6 110 67.3
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 6.6e-43 177.6 119 63.0
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 4.2e-42 174.9 120 61.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.2e-42 174.9 120 61.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 7.2e-42 174.1 120 61.7
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-41 173.3 120 60.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.1e-41 172.6 120 61.7
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-41 172.2 120 61.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-41 172.2 120 60.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.8e-41 172.2 120 60.8
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-41 171.8 129 61.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.1e-41 171.0 120 60.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 8.0e-41 170.6 120 60.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.0e-41 170.6 120 61.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 8.0e-41 170.6 120 62.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.0e-40 170.2 120 61.7
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.4e-40 169.9 120 60.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.8e-40 169.5 120 60.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.8e-40 169.5 115 60.9
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-40 169.1 132 58.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.0e-40 168.7 120 60.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 4.0e-40 168.3 115 61.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.2e-40 167.9 115 61.7
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.8e-40 167.5 129 58.1
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 8.9e-40 167.2 124 60.5
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.9e-40 167.2 119 58.0
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-39 166.8 121 60.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.5e-39 166.4 122 61.5
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.4e-39 164.9 119 58.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 5.7e-39 164.5 115 62.6
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.8e-39 163.7 119 58.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-38 163.3 115 61.7
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.3e-38 163.3 115 58.3
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.7e-38 162.9 119 58.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.7e-38 162.9 121 55.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.9e-38 161.4 114 60.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 8.3e-38 160.6 115 61.7
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.1e-37 160.2 115 60.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.3e-35 153.3 122 59.0
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.9e-35 152.1 115 55.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 4.3e-34 148.3 105 63.8
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 3.1e-32 142.1 95 64.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.4e-29 133.3 119 49.6
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.0e-24 115.2 62 75.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 8.9e-24 114.0 62 74.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.4e-23 112.1 62 71.0
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.4e-23 112.1 62 71.0
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 4.4e-23 111.7 71 64.8
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-22 110.2 62 72.6
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 3.7e-22 108.6 72 58.3
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.8e-15 84.7 76 56.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-15 84.7 62 58.1
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-15 84.7 62 58.1
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-15 84.7 62 58.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 8.1e-09 64.3 35 71.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.2e-08 61.6 35 68.6


User provided reference genes

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