Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 0.0e+00 1592.8 847 100.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1270.0 846 81.2
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1231.9 848 79.0
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1151.0 856 73.4
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1080.5 849 69.6
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.2e-311 1073.2 847 69.7
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.2e-310 1069.7 850 68.0
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 1.3e-309 1066.2 844 68.8
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 6.3e-309 1063.9 844 68.5
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 1.0e-306 1056.6 849 68.1
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.3e-306 1056.2 844 68.1
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 7.2e-305 1050.4 851 67.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 2.8e-304 1048.5 849 66.5
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.4e-303 1046.2 813 69.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.8e-303 1045.8 849 68.2
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.8e-303 1045.8 844 67.9
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 5.2e-303 1044.3 843 66.7
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 1.5e-302 1042.7 850 66.4
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 2.0e-302 1042.3 846 67.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.0e-302 1042.3 844 67.4
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.6e-302 1042.0 843 66.9
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.8e-300 1035.8 843 66.3
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 9.2e-300 1033.5 843 66.3
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 1.3e-298 1029.6 849 66.3
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 3.8e-298 1028.1 882 64.5
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 8.6e-298 1026.9 850 65.2
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.1e-297 1026.5 854 66.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 2.1e-296 1022.3 856 66.8
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.0e-295 1020.0 847 65.9
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.8e-295 1017.3 848 64.4
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.2e-294 1016.5 848 64.3
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.2e-293 1012.3 848 64.4
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 4.9e-293 1011.1 849 65.0
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 6.4e-293 1010.7 842 66.9
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 1.4e-292 1009.6 848 66.2
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 7.0e-292 1007.3 844 65.0
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.9e-290 1001.5 845 64.5
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 2.5e-289 998.8 844 66.7
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.6e-288 996.1 844 65.0
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.6e-288 996.1 844 64.6
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.6e-288 996.1 894 63.2
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.1e-288 995.7 855 63.2
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 2.3e-287 992.3 850 64.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 2.0e-286 989.2 846 64.5
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.3e-285 983.8 851 62.6
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.4e-284 983.0 851 63.7
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 4.1e-284 981.5 844 63.6
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 4.1e-284 981.5 851 62.9
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 9.2e-284 980.3 843 64.3
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 5.0e-282 974.5 815 65.0
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 6.6e-282 974.2 845 63.9
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 8.6e-282 973.8 846 63.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.1e-281 973.4 841 64.4
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.9e-281 972.6 849 63.3
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 2.5e-281 972.2 850 63.2
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 4.3e-281 971.5 849 63.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 7.3e-281 970.7 843 62.8
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 7.3e-281 970.7 848 62.6
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 9.5e-281 970.3 847 61.7
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.8e-279 966.1 777 66.4
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 4.1e-276 954.9 784 66.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 5.4e-276 954.5 867 61.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 9.2e-276 953.7 843 63.1
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.1e-275 952.6 846 60.0
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 6.0e-275 951.0 843 61.4
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 7.8e-275 950.7 842 61.5
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 7.8e-275 950.7 849 61.0
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 5.6e-273 944.5 846 59.9
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 7.3e-273 944.1 839 61.6
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.6e-272 943.0 840 62.0
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 6.2e-272 941.0 845 59.9
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 8.1e-272 940.6 845 60.0
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 8.1e-272 940.6 848 59.9
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 8.1e-272 940.6 845 60.9
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.8e-270 934.5 846 59.3
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 5.8e-270 934.5 846 59.6
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 1.6e-267 926.4 843 59.3
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.6e-267 926.4 844 61.3
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 6.0e-267 924.5 843 59.0
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 3.9e-266 921.8 861 58.7
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.1e-265 920.2 853 60.8
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 7.3e-265 917.5 779 64.4
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.8e-263 912.9 888 57.1
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.4e-263 912.5 946 56.2
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 9.9e-262 907.1 847 59.3
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.9e-261 905.6 855 60.6
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 2.7e-259 899.0 893 57.7
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.3e-256 890.2 848 58.8
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 7.9e-243 844.3 850 55.2
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.3e-242 843.6 855 55.3
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 6.0e-235 818.1 846 54.6
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.4e-223 780.4 893 51.0
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.1e-219 766.5 699 61.2
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 2.6e-214 749.6 849 54.2
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 2.8e-208 729.6 695 58.8
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.3e-200 701.8 619 61.9
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.0e-181 641.3 516 70.3
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.7e-168 596.3 810 44.1
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 4.1e-167 592.8 658 53.5
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 8.6e-165 585.1 867 42.1
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 4.1e-159 566.2 796 43.3
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 9.9e-153 545.0 324 87.0
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.5e-145 521.2 568 51.1
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 6.0e-142 509.2 880 36.6
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 4.0e-138 496.5 801 38.2
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.3e-138 496.1 403 64.8
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 6.9e-138 495.7 373 67.6
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 3.4e-137 493.4 854 37.5
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.9e-112 410.6 269 77.7
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.0e-97 361.3 506 46.6
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.2e-96 357.8 255 71.8
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.5e-92 345.1 275 62.5
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.5e-87 328.6 312 56.1
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.5e-76 292.0 243 67.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 5.0e-56 223.8 839 26.0
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.2e-51 208.4 379 39.6
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 8.1e-46 189.9 871 24.0
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.7e-43 181.0 163 61.3
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 6.0e-41 173.7 212 48.6
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 8.1e-38 163.3 119 68.9
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.8e-37 162.2 125 67.2
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-31 142.5 96 75.0
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.3e-31 141.0 191 42.9
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.8e-30 137.5 101 70.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 9.3e-26 123.2 111 61.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.7e-24 119.0 70 80.0
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.7e-24 119.0 70 80.0
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-23 116.3 69 91.3
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.8e-22 110.9 123 48.8
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.2e-20 106.3 72 75.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.5e-15 88.6 79 59.5
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-12 79.3 86 47.7
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 2.5e-10 72.0 61 60.7
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 5.5e-10 70.9 166 34.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 6.0e-09 67.4 123 37.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.3e-08 65.5 47 70.2


User provided reference genes

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