Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold394G50716 Striga asiatica HOM05D002486 ORTHO05D002606 7.3e-59 230.3 115 100.0
Migut.J01886 Erythranthe guttata HOM05D002486 ORTHO05D002606 4.5e-16 88.2 87 54.0
Medtr6g029390 Medicago truncatula HOM05D002486 ORTHO05D002606 1.3e-15 86.7 75 54.7
Duzib128G1093 Durio zibethinus HOM05D002486 ORTHO05D002606 2.9e-15 85.5 76 51.3
TPR.G9137 Trifolium pratense HOM05D002486 ORTHO05D002606 2.9e-15 85.5 75 53.3
Potri.013G058200 Populus trichocarpa HOM05D002486 ORTHO05D002606 3.8e-15 85.1 75 54.7
Manes.09G141300 Manihot esculenta HOM05D002486 ORTHO05D002606 6.5e-15 84.3 75 53.3
THA.LOC104820773 Tarenaya hassleriana HOM05D002486 ORTHO05D002606 1.1e-14 83.6 78 51.3
A02p04760 Brassica napus HOM05D002486 ORTHO05D002606 2.5e-14 82.4 79 51.9
CARHR194910 Cardamine hirsuta HOM05D002486 ORTHO05D002606 2.5e-14 82.4 79 51.9
BraA02t05435Z Brassica rapa HOM05D002486 ORTHO05D002606 3.2e-14 82.0 79 51.9
Medtr5g098200 Medicago truncatula HOM05D002486 ORTHO05D002606 4.2e-14 81.6 75 50.7
Sp6g26160 Schrenkiella parvula HOM05D002486 ORTHO05D002606 4.2e-14 81.6 79 50.6
Thecc.05G294700 Theobroma cacao HOM05D002486 ORTHO05D002606 4.2e-14 81.6 76 46.1
C02p09720 Brassica napus HOM05D002486 ORTHO05D002606 5.5e-14 81.3 80 52.5
BolC2t06881H Brassica oleracea HOM05D002486 ORTHO05D002606 5.5e-14 81.3 74 54.1
BolC9t58726H Brassica oleracea HOM05D002486 ORTHO05D002606 5.5e-14 81.3 79 51.9
Potri.019G035000 Populus trichocarpa HOM05D002486 ORTHO05D002606 5.5e-14 81.3 75 53.3
Carub.0006s1644 Capsella rubella HOM05D002486 ORTHO05D002606 7.2e-14 80.9 79 50.6
Thhalv10015306m.g Eutrema salsugineum HOM05D002486 ORTHO05D002606 7.2e-14 80.9 79 49.4
BcaC03g13580 Brassica carinata HOM05D002486 ORTHO05D002606 9.4e-14 80.5 79 50.6
BcaC03g13581 Brassica carinata HOM05D002486 ORTHO05D002606 9.4e-14 80.5 79 50.6
CAN.G1001.29 Capsicum annuum HOM05D002486 ORTHO05D002606 9.4e-14 80.5 77 46.8
Lalb_Chr06g0173991 Lupinus albus HOM05D002486 ORTHO05D002606 9.4e-14 80.5 76 53.9
COL.COLO4_13595 Corchorus olitorius HOM05D002486 ORTHO05D002606 1.2e-13 80.1 77 49.4
Sabra13G0051700 Salix brachista HOM05D002486 ORTHO05D002606 1.2e-13 80.1 75 52.0
Haze_19420 Corylus avellana HOM05D002486 ORTHO05D002606 1.6e-13 79.7 73 53.4
Thhalv10015170m.g Eutrema salsugineum HOM05D002486 ORTHO05D002606 1.6e-13 79.7 79 51.9
Glyma.02G072300 Glycine max HOM05D002486 ORTHO05D002606 1.6e-13 79.7 75 52.0
Phvul.004G080100 Phaseolus vulgaris HOM05D002486 ORTHO05D002606 1.6e-13 79.7 75 49.3
Psat1g092160 Pisum sativum HOM05D002486 ORTHO05D002606 1.6e-13 79.7 73 53.4
Solyc06g075190.1 Solanum lycopersicum HOM05D002486 ORTHO05D002606 1.6e-13 79.7 84 45.2
Sopen06g031600 Solanum pennellii HOM05D002486 ORTHO05D002606 1.6e-13 79.7 84 45.2
Haze_19449 Corylus avellana HOM05D002486 ORTHO05D002606 2.1e-13 79.3 73 53.4
PGSC0003DMG400003369 Solanum tuberosum HOM05D002486 ORTHO05D002606 2.1e-13 79.3 84 45.2
Manes.08G144400 Manihot esculenta HOM05D002486 ORTHO05D002606 2.7e-13 79.0 77 48.1
Sabra19G0045000 Salix brachista HOM05D002486 ORTHO05D002606 2.7e-13 79.0 75 48.0
BcaB01g06400 Brassica carinata HOM05D002486 ORTHO05D002606 3.6e-13 78.6 75 52.0
Glyma.16G153500 Glycine max HOM05D002486 ORTHO05D002606 3.6e-13 78.6 75 50.7
Sabra19G0042700 Salix brachista HOM05D002486 ORTHO05D002606 3.6e-13 78.6 75 48.0
BcaB08g36701 Brassica carinata HOM05D002486 ORTHO05D002606 4.6e-13 78.2 74 52.7
C09p58820 Brassica napus HOM05D002486 ORTHO05D002606 4.6e-13 78.2 79 50.6
Glyma.16G041100 Glycine max HOM05D002486 ORTHO05D002606 4.6e-13 78.2 75 53.3
Peaxi162Scf00463g00001 Petunia axillaris HOM05D002486 ORTHO05D002606 4.6e-13 78.2 78 47.4
AT5G18150 Arabidopsis thaliana HOM05D002486 ORTHO05D002606 7.9e-13 77.4 79 49.4
A10p21350 Brassica napus HOM05D002486 ORTHO05D002606 7.9e-13 77.4 79 48.1
Duzib177G0910 Durio zibethinus HOM05D002486 ORTHO05D002606 7.9e-13 77.4 76 43.4
Duzib177G1131 Durio zibethinus HOM05D002486 ORTHO05D002606 7.9e-13 77.4 76 43.4
Atru.chr2.1382 Acer truncatum HOM05D002486 ORTHO05D002606 1.4e-12 76.6 76 44.7
Cpa.g.sc51.116 Carica papaya HOM05D002486 ORTHO05D002606 1.8e-12 76.3 75 46.7
Nitab4.5_0000626g0060 Nicotiana tabacum HOM05D002486 ORTHO05D002606 1.8e-12 76.3 95 45.3
BcaNung03112 Brassica carinata HOM05D002486 ORTHO05D002606 2.3e-12 75.9 75 49.3
BraA02t05232Z Brassica rapa HOM05D002486 ORTHO05D002606 2.3e-12 75.9 75 52.0
Gorai.007G289900 Gossypium raimondii HOM05D002486 ORTHO05D002606 2.3e-12 75.9 76 44.7
MD12G1003700 Malus domestica HOM05D002486 ORTHO05D002606 2.3e-12 75.9 80 45.0
BraA10t44198Z Brassica rapa HOM05D002486 ORTHO05D002606 3.0e-12 75.5 78 47.4
CSS0028749 Camellia sinensis var. sinensis HOM05D002486 ORTHO05D002606 3.0e-12 75.5 75 48.0
Cfa016443 Carpinus fangiana HOM05D002486 ORTHO05D002606 3.0e-12 75.5 73 49.3
CiPaw.10G001000 Carya illinoinensis HOM05D002486 ORTHO05D002606 3.0e-12 75.5 81 48.1
Ciclev10022769m.g Citrus clementina HOM05D002486 ORTHO05D002606 3.0e-12 75.5 75 46.7
Lalb_Chr02g0157121 Lupinus albus HOM05D002486 ORTHO05D002606 3.0e-12 75.5 76 50.0
QL07p019482 Quercus lobata HOM05D002486 ORTHO05D002606 3.0e-12 75.5 77 46.8
arahy.Tifrunner.gnm1.ann1.GK9JFI Arachis hypogaea HOM05D002486 ORTHO05D002606 3.9e-12 75.1 76 48.7
BolC3t13498H Brassica oleracea HOM05D002486 ORTHO05D002606 3.9e-12 75.1 75 50.7
Gohir.A11G259700 Gossypium hirsutum HOM05D002486 ORTHO05D002606 3.9e-12 75.1 74 45.9
Oeu024504.1 Olea europaea HOM05D002486 ORTHO05D002606 3.9e-12 75.1 79 48.1
AL6G29350 Arabidopsis lyrata HOM05D002486 ORTHO05D002606 5.1e-12 74.7 79 46.8
arahy.Tifrunner.gnm1.ann1.CLS04B Arachis hypogaea HOM05D002486 ORTHO05D002606 5.1e-12 74.7 75 49.3
DCAR_017052 Daucus carota HOM05D002486 ORTHO05D002606 5.1e-12 74.7 76 47.4
Ca_08265_v3 Cicer arietinum L. HOM05D002486 ORTHO05D002606 6.7e-12 74.3 75 49.3
Cc06_g22980 Coffea canephora HOM05D002486 ORTHO05D002606 6.7e-12 74.3 74 44.6
Glyma.19G112000 Glycine max HOM05D002486 ORTHO05D002606 6.7e-12 74.3 72 51.4
Lsat_1_v5_gn_6_37000 Lactuca sativa HOM05D002486 ORTHO05D002606 6.7e-12 74.3 79 41.8
Nitab4.5_0000394g0010 Nicotiana tabacum HOM05D002486 ORTHO05D002606 6.7e-12 74.3 88 45.5
Phvul.001G110700 Phaseolus vulgaris HOM05D002486 ORTHO05D002606 6.7e-12 74.3 79 46.8
THA.LOC104827276 Tarenaya hassleriana HOM05D002486 ORTHO05D002606 6.7e-12 74.3 74 48.6
TPR.G5914 Trifolium pratense HOM05D002486 ORTHO05D002606 6.7e-12 74.3 81 49.4
TWI32G0446 Tripterygium wilfordii HOM05D002486 ORTHO05D002606 6.7e-12 74.3 76 43.4
CSS0015391 Camellia sinensis var. sinensis HOM05D002486 ORTHO05D002606 8.8e-12 73.9 75 48.0
DCAR_013687 Daucus carota HOM05D002486 ORTHO05D002606 8.8e-12 73.9 76 48.7
GSVIVG01001063001 Vitis vinifera HOM05D002486 ORTHO05D002606 8.8e-12 73.9 77 44.2
AT5G14602 Arabidopsis thaliana HOM05D002486 ORTHO05D002606 1.1e-11 73.6 79 45.6
BcaC03g13465 Brassica carinata HOM05D002486 ORTHO05D002606 1.1e-11 73.6 75 52.0
Carub.0006s1278 Capsella rubella HOM05D002486 ORTHO05D002606 1.1e-11 73.6 75 42.7
Gohir.D11G269800 Gossypium hirsutum HOM05D002486 ORTHO05D002606 1.1e-11 73.6 76 43.4
BcaC03g13463 Brassica carinata HOM05D002486 ORTHO05D002606 1.5e-11 73.2 75 50.7
BcaNung03110 Brassica carinata HOM05D002486 ORTHO05D002606 1.5e-11 73.2 76 47.4
A03p08680 Brassica napus HOM05D002486 ORTHO05D002606 1.5e-11 73.2 75 52.0
Gohir.A11G296400 Gossypium hirsutum HOM05D002486 ORTHO05D002606 1.5e-11 73.2 80 48.8
MD14G1002600 Malus domestica HOM05D002486 ORTHO05D002606 1.5e-11 73.2 81 46.9
BcaB01g05178 Brassica carinata HOM05D002486 ORTHO05D002606 2.0e-11 72.8 75 49.3
C03p10120 Brassica napus HOM05D002486 ORTHO05D002606 2.0e-11 72.8 75 49.3
BraA03t10191Z Brassica rapa HOM05D002486 ORTHO05D002606 2.0e-11 72.8 75 49.3
Gorai.007G343300 Gossypium raimondii HOM05D002486 ORTHO05D002606 2.5e-11 72.4 76 46.1
TAR623G1300 Trochodendron aralioides HOM05D002486 ORTHO05D002606 2.5e-11 72.4 76 43.4
PGR042G1972 Punica granatum HOM05D002486 ORTHO05D002606 3.3e-11 72.0 76 43.4
HanXRQChr13g0397721 Helianthus annuus HOM05D002486 ORTHO05D002606 5.7e-11 71.2 74 43.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 5.7e-11 71.2 82 43.9
CARHR198710 Cardamine hirsuta HOM05D002486 ORTHO05D002606 7.4e-11 70.9 76 43.4
Medtr7g085610 Medicago truncatula HOM05D002486 ORTHO05D002606 7.4e-11 70.9 76 46.1
EL10Ac3g06824 Beta vulgaris HOM05D002486 ORTHO05D002606 9.7e-11 70.5 79 48.1
BolC2t06645H Brassica oleracea HOM05D002486 ORTHO05D002606 9.7e-11 70.5 75 49.3
Lj1g0009743 Lotus japonicus HOM05D002486 ORTHO05D002606 1.3e-10 70.1 75 45.3
DCAR_019877 Daucus carota HOM05D002486 ORTHO05D002606 1.7e-10 69.7 72 41.7
Gohir.D11G310500 Gossypium hirsutum HOM05D002486 ORTHO05D002606 1.7e-10 69.7 80 47.5
Aa31LG11G11450 Aethionema arabicum HOM05D002486 ORTHO05D002606 2.2e-10 69.3 79 45.6
A02p02630 Brassica napus HOM05D002486 ORTHO05D002606 2.2e-10 69.3 75 48.0
HanXRQChr02g0054231 Helianthus annuus HOM05D002486 ORTHO05D002606 2.2e-10 69.3 74 43.2
Hund19234 Selenicereus undatus HOM05D002486 ORTHO05D002606 2.2e-10 69.3 84 39.3
GSVIVG01033404001 Vitis vinifera HOM05D002486 ORTHO05D002606 2.2e-10 69.3 72 44.4
BraA02t05231Z Brassica rapa HOM05D002486 ORTHO05D002606 2.8e-10 68.9 74 45.9
Eucgr.A02098 Eucalyptus grandis HOM05D002486 ORTHO05D002606 2.8e-10 68.9 77 44.2
Sc06g0000380 Simmondsia chinensis HOM05D002486 ORTHO05D002606 2.8e-10 68.9 76 46.1
BcaB05g23301 Brassica carinata HOM05D002486 ORTHO05D002606 3.7e-10 68.6 74 44.6
Prupe.7G004200 Prunus persica HOM05D002486 ORTHO05D002606 3.7e-10 68.6 73 47.9
AL6G25370 Arabidopsis lyrata HOM05D002486 ORTHO05D002606 6.3e-10 67.8 79 41.8
Rhsim04G0087700 Rhododendron simsii HOM05D002486 ORTHO05D002606 6.3e-10 67.8 75 45.3
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 8.2e-10 67.4 71 46.5
CANSAT78G1855 Cannabis sativa HOM05D002486 ORTHO05D002606 1.1e-09 67.0 83 42.2
Actinidia17304 Actinidia chinensis HOM05D002486 ORTHO05D002606 1.4e-09 66.6 73 42.5
BcaC03g13464 Brassica carinata HOM05D002486 ORTHO05D002606 1.4e-09 66.6 68 51.5
Nn2g15866 Nelumbo nucifera HOM05D002486 ORTHO05D002606 1.4e-09 66.6 79 43.0
Actinidia38614 Actinidia chinensis HOM05D002486 ORTHO05D002606 2.4e-09 65.9 73 43.8
BcaC03g13469 Brassica carinata HOM05D002486 ORTHO05D002606 2.4e-09 65.9 75 45.3
Psat0s1971g0080 Pisum sativum HOM05D002486 ORTHO05D002606 2.4e-09 65.9 75 46.7
Ah.04g153170 Amaranthus hybridus HOM05D002486 ORTHO05D002606 4.1e-09 65.1 79 41.8
CDE02G2185 Ceratophyllum demersum HOM05D002486 ORTHO05D002606 5.3e-09 64.7 73 45.2
Gohir.A13G171950 Gossypium hirsutum HOM05D002486 ORTHO05D002606 5.3e-09 64.7 78 42.3
CDE02G4642 Ceratophyllum demersum HOM05D002486 ORTHO05D002606 6.9e-09 64.3 81 44.4
Gohir.D13G177800 Gossypium hirsutum HOM05D002486 ORTHO05D002606 6.9e-09 64.3 77 42.9
AUR62032050 Chenopodium quinoa HOM05D002486 ORTHO05D002606 9.1e-09 63.9 79 43.0
AUR62032697 Chenopodium quinoa HOM05D002486 ORTHO05D002606 9.1e-09 63.9 79 43.0
MBI04_g38345_MAGBIO Magnolia biondii HOM05D002486 ORTHO05D002606 9.1e-09 63.9 74 45.9
CsaV3_4G013260 Cucumis sativus L. HOM05D002486 ORTHO05D002606 2.6e-08 62.4 88 40.9
Mapoly0027s0077 Marchantia polymorpha HOM05D002486 ORTHO05D002606 2.6e-08 62.4 74 40.5
Gorai.013G203100 Gossypium raimondii HOM05D002486 ORTHO05D002606 1.3e-07 60.1 78 39.7
ClCG04G005330 Citrullus lanatus HOM05D002486 ORTHO05D002606 2.9e-07 58.9 78 37.2
MELO3C008804.2 Cucumis melo HOM05D002486 ORTHO05D002606 2.9e-07 58.9 87 35.6
HanXRQChr14g0438171 Helianthus annuus HOM05D002486 ORTHO05D002606 2.9e-07 58.9 76 36.8
Sed0026925 Sechium edule HOM05D002486 ORTHO05D002606 5.0e-07 58.2 71 38.0
SEGI_06891 Sequoiadendron giganteum HOM05D002486 ORTHO05D002606 5.0e-07 58.2 86 38.4
SEGI_12704 Sequoiadendron giganteum HOM05D002486 ORTHO05D002606 5.0e-07 58.2 71 40.8
C02p07110 Brassica napus HOM05D002486 ORTHO05D002606 1.1e-06 57.0 82 42.7
BolC2t06644H Brassica oleracea HOM05D002486 ORTHO05D002606 1.1e-06 57.0 82 42.7
RcHm_v2.0_Chr5g0072461 Rosa chinensis HOM05D002486 ORTHO05D002606 2.5e-06 55.8 85 41.2
Dinv14577 Davidia involucrata HOM05D001630 ORTHO05D002606 5.5e-06 54.7 66 43.9
ECA233G6097 Erigeron canadensis HOM05D002486 ORTHO05D002606 5.5e-06 54.7 63 36.5


User provided reference genes

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