Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.2e-247 859.4 420 100.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.0e-218 762.3 420 86.0
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.3e-214 749.6 415 86.0
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.5e-213 745.3 415 85.1
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 7.4e-210 733.8 415 83.6
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 5.0e-206 721.1 416 80.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 5.5e-205 717.6 416 80.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 7.2e-205 717.2 418 79.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.2e-204 716.5 459 75.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.2e-202 709.9 416 79.8
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.8e-201 705.3 416 78.8
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.3e-201 704.1 416 79.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.1e-200 703.4 414 79.2
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.8e-200 702.6 416 78.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 4.1e-200 701.4 416 79.1
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 5.3e-200 701.0 414 79.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 7.0e-200 700.7 416 78.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 9.1e-200 700.3 416 79.1
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.5e-199 698.0 430 76.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.5e-199 698.0 416 78.1
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.7e-198 696.0 416 77.9
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.7e-198 696.0 437 75.3
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 2.9e-198 695.3 416 78.1
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.1e-197 693.3 500 68.4
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.5e-197 693.0 416 78.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.2e-197 691.4 415 76.6
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 7.2e-197 690.6 411 77.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.6e-196 689.5 414 77.1
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.6e-196 689.5 416 77.6
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.1e-196 689.1 415 77.1
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.1e-196 689.1 414 77.5
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.7e-196 688.7 414 77.8
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.0e-196 687.2 416 77.4
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 8.0e-196 687.2 414 78.0
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 8.0e-196 687.2 433 75.5
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 77.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-195 685.6 417 75.5
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.0e-195 684.9 415 76.6
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.0e-195 684.9 415 76.9
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 5.2e-195 684.5 416 76.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.8e-195 683.7 417 75.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 8.8e-195 683.7 416 76.4
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.5e-194 682.9 412 76.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.0e-194 682.6 420 75.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.0e-194 682.6 431 75.4
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.6e-194 682.2 416 77.2
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.6e-194 682.2 416 77.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.4e-194 681.8 415 76.4
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 9.8e-194 680.2 414 76.8
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 9.8e-194 680.2 416 74.8
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.8e-193 678.7 411 76.4
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.3e-193 677.2 415 75.7
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.4e-192 676.4 417 74.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.8e-192 676.0 416 75.5
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.4e-192 675.6 417 75.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 3.1e-192 675.2 412 76.0
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.1e-192 675.2 417 74.3
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 7.0e-192 674.1 417 74.6
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.5e-191 671.8 416 74.0
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.5e-191 671.4 436 72.9
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.5e-191 671.4 417 73.6
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.5e-191 671.4 416 75.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 7.7e-191 670.6 411 76.2
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.0e-190 670.2 412 75.2
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.3e-190 669.8 416 74.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.3e-190 669.8 416 75.5
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 74.8
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.2e-190 669.1 417 74.3
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.2e-190 669.1 412 75.5
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.9e-190 668.7 416 75.7
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.9e-190 668.7 417 74.1
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 3.8e-190 668.3 416 73.8
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.8e-190 668.3 415 75.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 5.0e-190 667.9 411 74.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 8.5e-190 667.2 417 73.6
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 8.5e-190 667.2 416 75.7
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.1e-189 666.8 416 73.3
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.5e-189 666.4 416 73.3
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.9e-189 666.0 416 73.6
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.5e-189 665.6 416 73.3
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.5e-189 665.6 417 74.1
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 4.2e-189 664.8 416 73.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 7.2e-189 664.1 411 73.7
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.5e-189 663.7 416 73.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-188 663.3 416 75.2
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.2e-188 663.3 416 75.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.2e-188 663.3 412 75.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.6e-188 662.9 411 74.0
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.8e-188 662.1 416 75.2
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.8e-188 662.1 416 75.0
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.0e-188 660.6 409 75.1
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-187 659.1 432 73.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 4.0e-187 658.3 416 75.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.0e-187 658.3 416 74.3
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.8e-187 657.5 417 72.9
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.8e-187 657.1 432 73.1
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.2e-186 656.8 416 73.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.5e-186 656.4 416 71.9
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.4e-186 654.8 417 72.7
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 9.8e-186 653.7 417 73.9
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.7e-185 652.9 432 72.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.2e-185 652.5 418 73.0
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.2e-185 652.5 416 73.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.2e-185 652.5 415 74.9
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.4e-184 649.8 409 73.3
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.1e-184 648.7 411 72.0
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.0e-183 646.0 402 77.1
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.5e-183 645.2 415 73.3
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.8e-183 644.0 419 72.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 7.8e-183 644.0 417 71.2
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 7.8e-183 644.0 411 72.5
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-182 643.7 449 67.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.0e-182 643.7 414 71.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.7e-182 642.9 416 72.1
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.3e-182 642.5 416 73.8
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.4e-179 633.3 416 73.8
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.0e-179 632.1 413 71.2
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 5.2e-179 631.3 420 68.6
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 5.2e-179 631.3 416 69.7
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 6.8e-179 630.9 368 79.6
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.5e-178 629.8 416 74.3
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 4.4e-178 628.2 415 69.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.7e-175 619.0 363 79.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.5e-175 618.6 416 70.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.1e-173 613.6 411 70.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.6e-172 609.8 412 68.7
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.1e-172 609.4 417 68.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.0e-171 607.1 417 68.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 8.9e-171 604.0 412 69.4
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.3e-166 589.3 358 76.0
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 7.3e-165 584.3 422 63.3
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 3.1e-163 578.9 363 73.8
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 8.9e-163 577.4 416 66.6
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 3.4e-162 575.5 412 65.8
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 9.9e-162 573.9 342 77.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.1e-155 553.9 410 62.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 7.6e-154 547.7 341 74.2
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.7e-150 536.6 433 62.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.3e-150 536.2 410 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 5.1e-150 535.0 412 60.4
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 4.7e-148 528.5 419 62.3
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 9.3e-136 487.6 427 56.0
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.6e-130 469.5 302 70.9
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.3e-129 467.2 345 65.2
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.5e-120 436.4 314 66.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 6.3e-116 421.8 302 68.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.2e-113 413.3 291 69.1
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.5e-106 390.6 407 49.4
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 7.7e-106 388.3 406 47.0
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 3.2e-104 382.9 222 77.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 7.9e-103 378.3 506 38.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.6e-101 373.2 425 46.4
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 9.7e-101 371.3 235 74.0
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.8e-91 340.5 198 79.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.7e-90 335.1 198 77.8
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.2e-87 327.8 243 60.9
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.6e-82 310.8 221 69.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 4.7e-71 272.7 174 74.7
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 3.4e-69 266.5 231 58.4
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 4.1e-67 259.6 258 54.3
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 9.2e-67 258.5 163 72.4
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 9.8e-61 238.4 156 71.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.8e-58 228.8 178 63.5
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 5.6e-56 222.6 230 51.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-55 221.5 167 63.5
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.3e-52 211.5 181 56.9
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.7e-50 203.8 335 39.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.0e-49 201.8 124 75.8
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.5e-48 197.2 124 70.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.6e-48 196.1 121 72.7
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.1e-47 192.2 338 38.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.2e-45 188.3 124 71.8
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.0e-38 163.3 100 71.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 9.9e-37 158.7 122 60.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-29 135.2 87 75.9
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.8e-29 132.9 126 55.6
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 2.1e-26 124.4 85 65.9
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 9.6e-24 115.5 71 73.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.7e-18 97.4 59 72.9
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 3.9e-17 93.6 89 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.5e-16 91.7 89 49.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-11 75.5 60 60.0
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 3.7e-07 60.5 78 34.6
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 3.1e-06 57.4 35 65.7
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 4.0e-06 57.0 62 43.5


User provided reference genes

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