Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.4e-54 216.1 109 100.0
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 5.0e-49 197.6 109 90.8
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 3.9e-46 188.0 109 82.6
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 6.3e-44 180.6 109 79.8
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.1e-43 179.9 98 89.8
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.8e-43 179.1 108 78.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.3e-43 177.6 109 78.9
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 9.1e-43 176.8 106 80.2
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.1e-43 176.8 107 81.3
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.2e-42 176.4 106 80.2
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.2e-42 176.4 107 81.3
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 106 79.2
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.6e-42 176.0 106 80.2
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.6e-42 176.0 106 80.2
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.6e-42 175.3 106 79.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.6e-42 175.3 109 77.1
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.5e-42 174.9 106 79.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 4.5e-42 174.5 105 80.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.9e-42 174.1 107 78.5
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 7.7e-42 173.7 106 78.3
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.0e-41 173.3 105 79.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 80.4
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 82.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.7e-41 172.6 107 77.6
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.7e-41 172.6 107 78.5
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.2e-41 172.2 109 78.9
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.2e-41 172.2 106 78.3
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 2.2e-41 172.2 107 79.4
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.2e-41 172.2 98 83.7
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.9e-41 171.8 107 78.5
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.9e-41 171.8 107 78.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.9e-41 171.8 106 78.3
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 3.8e-41 171.4 107 77.6
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.8e-41 171.4 107 77.6
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.8e-41 171.4 107 77.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.8e-41 171.4 106 77.4
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.0e-41 171.0 107 78.5
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.0e-41 171.0 107 78.5
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 5.0e-41 171.0 107 80.4
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 8.5e-41 170.2 106 77.4
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 8.5e-41 170.2 107 76.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 8.5e-41 170.2 98 83.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-40 169.9 109 76.1
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.1e-40 169.9 107 77.6
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.5e-40 169.5 109 76.1
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-40 169.5 109 76.1
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-40 169.5 109 76.1
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-40 169.5 109 76.1
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.5e-40 169.5 109 76.1
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.9e-40 169.1 109 77.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.9e-40 169.1 107 76.6
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.5e-40 168.7 109 77.1
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.2e-40 168.3 108 75.9
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 76.6
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 4.2e-40 167.9 106 77.4
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.2e-40 167.9 108 75.9
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 5.5e-40 167.5 104 77.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.5e-40 167.5 108 77.8
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 7.2e-40 167.2 107 76.6
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 7.2e-40 167.2 109 76.1
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 9.4e-40 166.8 108 76.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.2e-39 166.4 106 75.5
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.6e-39 166.0 104 76.9
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.6e-39 166.0 109 74.3
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.6e-39 166.0 107 77.6
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.6e-39 166.0 107 77.6
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.1e-39 165.6 112 75.0
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-39 165.6 104 76.9
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-39 165.6 104 76.9
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.1e-39 165.6 109 75.2
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.1e-39 165.6 106 75.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 77.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 76.6
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 76.6
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 3.6e-39 164.9 107 74.8
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.6e-39 164.9 103 78.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.7e-39 164.5 100 79.0
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 4.7e-39 164.5 107 74.8
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 4.7e-39 164.5 108 77.8
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 4.7e-39 164.5 109 74.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 6.1e-39 164.1 104 76.0
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 6.1e-39 164.1 104 76.0
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 6.1e-39 164.1 110 74.5
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 8.0e-39 163.7 103 76.7
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 8.0e-39 163.7 98 80.6
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 8.0e-39 163.7 106 73.6
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.3e-38 162.2 98 79.6
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.0e-38 161.8 106 73.6
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 3.0e-38 161.8 107 72.9
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 3.0e-38 161.8 107 72.9
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.2e-38 161.0 106 75.5
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 6.7e-38 160.6 102 74.5
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 8.8e-38 160.2 106 75.5
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 8.8e-38 160.2 103 74.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.2e-37 159.8 104 74.0
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.5e-37 159.5 107 70.1
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.5e-37 159.5 107 72.0
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.0e-37 159.1 107 73.8
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.0e-37 159.1 100 76.0
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.0e-37 159.1 106 74.5
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.0e-37 159.1 107 72.9
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.6e-37 158.7 107 72.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 3.3e-37 158.3 108 71.3
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 4.4e-37 157.9 107 71.0
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 4.4e-37 157.9 106 72.6
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 5.7e-37 157.5 107 72.0
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 5.7e-37 157.5 104 75.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 7.5e-37 157.1 98 74.5
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 9.7e-37 156.8 107 72.0
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 9.7e-37 156.8 101 75.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.3e-36 156.4 107 72.9
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.3e-36 156.4 104 78.8
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.3e-36 156.4 98 78.6
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-36 156.0 107 71.0
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.7e-36 156.0 107 72.0
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.7e-36 156.0 108 71.3
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 2.2e-36 155.6 107 72.0
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.8e-36 155.2 107 72.0
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 2.8e-36 155.2 97 78.4
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.7e-36 154.8 107 71.0
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 4.8e-36 154.5 107 72.9
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 4.8e-36 154.5 104 73.1
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 6.3e-36 154.1 107 72.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 6.3e-36 154.1 107 71.0
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 6.3e-36 154.1 107 71.0
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 2.4e-35 152.1 106 70.8
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.1e-35 151.8 100 72.0
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 9.1e-35 150.2 107 70.1
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 70.4
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 70.4
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 70.4
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 70.4
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.7e-33 146.0 95 75.8
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.9e-33 145.2 97 74.2
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.0e-30 136.7 107 68.2
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.1e-27 125.2 88 70.5
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-27 124.8 81 74.1
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 5.4e-27 124.4 106 58.5
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 3.5e-26 121.7 92 68.5
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.7e-25 119.4 107 59.8
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 2.9e-25 118.6 96 65.6
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 6.5e-25 117.5 96 65.6
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.5e-24 115.5 91 64.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.5e-24 115.5 97 62.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 5.5e-24 114.4 66 81.8
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.0e-22 108.6 75 76.0
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-21 106.3 91 60.4
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 7.5e-21 104.0 96 58.3
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.8e-20 102.1 85 58.8
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 2.8e-20 102.1 56 83.9
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.3e-20 100.9 65 73.8
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.7e-18 95.5 85 57.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.5e-16 89.0 55 80.0
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.8e-14 82.8 79 55.7
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 5.2e-14 81.3 109 45.9
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 5.8e-13 77.8 55 67.3
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.5e-13 77.4 56 69.6
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.7e-12 75.1 54 64.8
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.1e-11 73.6 87 44.8
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 3.0e-09 65.5 44 72.7
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.6e-07 59.7 91 41.8


User provided reference genes

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