Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.1e-69 264.6 136 100.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.1e-48 196.8 129 76.0
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.8e-48 196.1 126 79.4
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.3e-48 194.5 131 74.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 6.9e-48 194.1 127 76.4
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.9e-48 194.1 131 72.5
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.2e-47 193.4 129 77.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.5e-47 193.0 123 80.5
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.7e-46 189.5 127 78.0
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.8e-46 188.3 127 71.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.8e-46 188.3 125 76.0
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.8e-46 188.3 124 76.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-45 186.8 128 71.9
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.4e-45 186.4 127 73.2
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.9e-45 186.0 126 73.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.9e-45 186.0 132 70.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.9e-45 186.0 129 69.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.9e-45 186.0 122 78.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.4e-45 185.7 128 72.7
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 4.2e-45 184.9 121 76.9
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.4e-45 184.5 128 70.3
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 7.1e-45 184.1 122 74.6
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 7.1e-45 184.1 127 71.7
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.1e-45 184.1 121 76.9
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 9.3e-45 183.7 123 72.4
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.1e-44 182.6 120 77.5
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.7e-44 182.2 128 71.9
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.7e-44 182.2 122 76.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.7e-44 182.2 127 72.4
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.7e-44 182.2 127 69.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.7e-44 182.2 123 73.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 4.6e-44 181.4 128 70.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.6e-44 181.4 121 76.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 4.6e-44 181.4 121 73.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.6e-44 181.4 122 74.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.0e-44 181.0 120 75.0
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 7.9e-44 180.6 120 75.8
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.0e-43 180.3 124 72.6
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.8e-43 179.5 127 70.1
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.8e-43 179.5 126 71.4
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-43 179.5 121 76.0
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.3e-43 179.1 118 78.8
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.0e-43 178.7 121 74.4
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.0e-43 178.7 127 70.1
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.0e-43 178.7 122 73.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 3.9e-43 178.3 125 69.6
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.9e-43 178.3 123 70.7
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.9e-43 178.3 123 69.9
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 6.7e-43 177.6 120 74.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 8.7e-43 177.2 120 75.0
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 8.7e-43 177.2 121 71.9
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.1e-42 176.8 124 71.0
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.5e-42 176.4 125 69.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-42 176.4 140 66.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.9e-42 176.0 121 72.7
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-42 176.0 124 70.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-42 176.0 126 70.6
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.5e-42 175.6 128 68.8
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 124 70.2
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.3e-42 175.3 124 70.2
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.6e-42 174.5 124 69.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 5.6e-42 174.5 124 71.0
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 7.4e-42 174.1 124 71.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 7.4e-42 174.1 120 75.0
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.4e-42 174.1 120 75.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.4e-42 174.1 120 75.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.4e-42 174.1 120 75.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 9.6e-42 173.7 123 71.5
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.1e-41 172.6 124 69.4
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.1e-41 172.6 123 69.9
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.8e-41 172.2 120 70.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 4.8e-41 171.4 120 69.2
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 6.2e-41 171.0 122 68.9
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 6.2e-41 171.0 127 67.7
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 8.1e-41 170.6 121 67.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.1e-41 170.6 120 73.3
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.1e-40 168.7 120 71.7
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 4.0e-40 168.3 120 69.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 5.3e-40 167.9 127 67.7
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 5.3e-40 167.9 127 65.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 2.0e-39 166.0 123 67.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.6e-39 165.6 127 60.6
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.4e-39 165.2 125 63.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 4.5e-39 164.9 122 64.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 5.8e-39 164.5 132 64.4
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 7.6e-39 164.1 126 66.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 9.9e-39 163.7 117 69.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.7e-38 162.9 127 64.6
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.7e-38 162.9 121 64.5
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.9e-38 161.4 127 59.8
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 6.4e-38 161.0 123 69.9
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 8.4e-38 160.6 127 63.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.9e-37 159.5 123 64.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.9e-37 159.5 127 63.0
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.2e-37 158.7 123 64.2
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 5.5e-37 157.9 127 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 9.3e-37 157.1 120 65.0
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 9.3e-37 157.1 121 65.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 9.3e-37 157.1 129 58.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.2e-36 156.8 127 65.4
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 4.6e-36 154.8 122 64.8
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 7.9e-36 154.1 122 61.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.0e-35 153.7 124 58.1
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.8e-35 152.9 108 65.7
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.8e-35 152.9 109 69.7
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.3e-35 152.5 128 57.8
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-35 152.5 122 57.4
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.0e-35 152.1 99 77.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.0e-35 152.1 99 77.8
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-35 152.1 123 58.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 3.0e-35 152.1 119 62.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 3.9e-35 151.8 112 68.8
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 5.1e-35 151.4 122 60.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 5.1e-35 151.4 123 61.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 6.7e-35 151.0 124 58.1
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 8.7e-35 150.6 123 61.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-34 149.8 124 53.2
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.9e-34 149.4 138 58.7
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.3e-34 148.3 120 60.0
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 9.6e-34 147.1 123 61.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.6e-34 147.1 132 56.8
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.3e-33 146.7 122 58.2
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-33 146.4 125 54.4
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.1e-33 146.0 132 56.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.1e-32 143.7 122 59.8
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 4.0e-32 141.7 119 59.7
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.0e-32 141.7 109 65.1
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 6.9e-32 141.0 121 60.3
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.5e-31 139.8 121 58.7
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-31 139.4 122 57.4
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-31 139.4 122 59.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.0e-31 139.4 127 57.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 3.4e-31 138.7 122 58.2
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 3.4e-31 138.7 122 58.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 3.4e-31 138.7 112 65.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 5.8e-31 137.9 120 59.2
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 7.6e-31 137.5 122 59.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 7.6e-31 137.5 122 58.2
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 7.6e-31 137.5 122 59.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.0e-30 137.1 120 56.7
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 3.8e-30 135.2 122 57.4
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 4.9e-30 134.8 122 56.6
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 4.9e-30 134.8 122 56.6
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 4.9e-30 134.8 122 56.6
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 4.9e-30 134.8 132 51.5
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 6.5e-30 134.4 123 55.3
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 8.4e-30 134.0 125 54.4
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.4e-29 133.3 121 56.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 4.2e-29 131.7 125 53.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 5.5e-29 131.3 119 52.9
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 7.1e-29 131.0 121 53.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 9.3e-29 130.6 127 53.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-28 130.2 121 54.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.0e-28 127.9 125 55.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.0e-27 125.6 110 60.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.1e-24 117.1 121 47.1
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.2e-23 113.6 117 51.3
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.6e-23 112.5 61 86.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.4e-19 100.1 81 61.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 5.7e-18 94.7 59 76.3
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.1e-16 90.5 55 70.9
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.4e-16 89.4 67 65.7
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.4e-16 89.4 113 41.6
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.3e-16 88.2 81 59.3
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-15 86.3 53 75.5
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.5e-15 85.1 62 71.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.5e-15 85.1 62 71.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.0e-14 84.0 65 64.6
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-14 83.6 61 65.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 5.0e-14 81.6 60 66.7
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 6.5e-14 81.3 60 63.3
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.4e-13 80.1 63 55.6
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 3.9e-11 72.0 73 49.3
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.3e-10 68.9 58 63.8
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-09 67.0 122 37.7
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.3e-08 61.6 62 51.6
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.0e-06 55.1 61 42.6


User provided reference genes

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