Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.0e-135 486.9 274 100.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.8e-100 369.8 278 77.3
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 5.2e-95 351.7 261 74.3
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.0e-90 337.4 274 71.5
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.4e-84 315.1 261 66.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.2e-77 293.1 260 65.8
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 7.0e-76 288.1 260 63.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.3e-74 283.9 258 63.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.3e-74 283.1 258 62.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.0e-74 282.7 261 62.8
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.1e-73 280.8 264 62.9
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.8e-72 276.2 258 58.9
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 3.6e-72 275.8 259 60.6
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 8.1e-72 274.6 260 59.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.3e-71 273.1 252 59.1
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 2.3e-71 273.1 261 58.2
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 5.2e-71 271.9 260 58.5
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.2e-71 271.9 261 58.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 8.9e-71 271.2 260 58.1
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 8.9e-71 271.2 259 59.8
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.2e-70 270.8 263 57.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.6e-70 269.6 261 57.9
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 3.4e-70 269.2 258 58.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.4e-70 269.2 259 58.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 7.5e-70 268.1 261 58.6
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 9.9e-70 267.7 259 57.9
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 9.9e-70 267.7 261 58.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.3e-69 267.3 261 58.2
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.2e-69 266.5 255 57.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.2e-69 266.5 261 56.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-69 266.2 256 57.8
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.7e-69 265.8 256 58.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 6.4e-69 265.0 258 57.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.9e-68 263.5 257 58.8
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.9e-68 263.5 262 58.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.9e-68 263.5 262 58.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.1e-68 262.3 261 57.9
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.4e-68 261.9 262 57.6
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 5.4e-68 261.9 258 57.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-67 260.8 250 58.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.6e-67 260.4 255 58.0
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.5e-67 259.2 255 56.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 4.6e-67 258.8 258 55.4
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 6.0e-67 258.5 251 57.8
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.0e-67 258.5 255 56.1
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 6.0e-67 258.5 259 57.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.8e-67 258.1 252 57.5
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.7e-66 256.9 252 57.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.0e-66 256.1 258 56.2
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.0e-66 256.1 258 54.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.1e-66 255.4 260 57.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 6.6e-66 255.0 261 56.3
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.5e-65 253.1 258 57.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 5.6e-65 251.9 253 56.9
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 5.6e-65 251.9 256 55.1
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.6e-64 250.4 253 54.2
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.8e-64 249.6 258 53.9
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 3.6e-64 249.2 258 54.3
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 4.7e-64 248.8 259 55.6
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.7e-64 248.8 255 59.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.1e-64 248.1 261 53.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 8.1e-64 248.1 261 54.0
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.4e-63 247.3 261 52.9
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.4e-63 247.3 255 53.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-63 247.3 261 52.9
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.4e-63 247.3 261 52.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.4e-63 247.3 252 55.2
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.8e-63 246.9 261 52.9
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.8e-63 246.9 253 55.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.4e-63 246.5 252 55.2
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.4e-63 246.5 248 53.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.1e-63 246.1 261 52.5
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 3.1e-63 246.1 261 52.9
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 3.1e-63 246.1 253 54.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.0e-63 245.7 258 54.3
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 4.0e-63 245.7 261 52.9
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 4.0e-63 245.7 260 54.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 6.8e-63 245.0 253 54.2
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 8.9e-63 244.6 250 54.8
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.5e-62 243.8 258 53.1
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.5e-62 243.8 247 54.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.0e-62 243.4 255 54.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.0e-62 243.4 250 54.8
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 7.6e-62 241.5 252 54.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 7.6e-62 241.5 239 57.7
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.3e-61 240.7 258 53.1
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.9e-61 238.8 253 53.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 6.4e-61 238.4 253 56.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 6.4e-61 238.4 241 56.0
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.4e-60 237.3 258 51.6
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.4e-60 237.3 255 51.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.4e-60 236.5 262 52.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.4e-60 235.3 261 51.3
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.4e-60 235.3 251 52.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.2e-59 234.2 252 52.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.7e-59 233.0 255 53.3
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 6.0e-59 231.9 255 52.9
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.3e-58 230.7 144 81.9
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.7e-58 230.3 255 52.5
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.1e-58 228.8 252 52.0
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 6.6e-58 228.4 255 52.5
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 8.6e-58 228.0 200 60.0
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 4.3e-57 225.7 185 65.9
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.6e-57 225.3 252 52.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.6e-56 223.8 255 52.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 8.1e-56 221.5 259 52.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.1e-55 221.1 258 51.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.5e-54 217.2 259 47.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-54 217.2 255 50.2
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.0e-54 216.9 252 53.2
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.4e-54 215.7 255 50.2
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.7e-53 213.8 255 48.6
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 7.1e-52 208.4 253 47.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 4.6e-51 205.7 144 72.9
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-50 202.6 185 60.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.3e-49 199.5 271 42.1
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 4.8e-48 195.7 183 59.6
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.1e-47 194.5 176 59.1
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.5e-46 189.1 265 40.8
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 5.8e-46 188.7 180 58.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.8e-46 188.7 141 69.5
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.2e-45 186.8 257 45.1
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 2.3e-42 176.8 263 44.9
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 3.9e-42 176.0 261 44.4
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 6.7e-42 175.3 207 51.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.5e-41 173.3 208 50.0
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.3e-40 171.0 202 50.0
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.1e-39 167.9 257 42.8
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.8e-39 167.2 256 42.6
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-35 154.5 255 42.0
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 7.9e-35 151.8 131 66.4
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.0e-34 151.4 114 65.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.8e-34 150.6 115 65.2
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 3.0e-34 149.8 252 38.5
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.0e-34 149.8 191 46.1
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.6e-32 144.1 214 43.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.1e-32 143.7 209 42.6
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.4e-31 141.0 115 66.1
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.1e-28 131.3 252 36.5
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.9e-28 130.6 141 52.5
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-27 127.9 205 41.0
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 3.9e-26 122.9 182 45.1
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 6.7e-26 122.1 255 32.5
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.9e-23 112.1 140 51.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 5.9e-22 109.0 92 60.9
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.0e-21 108.2 259 31.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.0e-21 105.9 90 64.4
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.4e-20 104.4 140 46.4
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.5e-20 103.6 201 37.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 3.2e-20 103.2 115 53.0
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-19 101.3 101 59.4
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.6e-19 99.8 94 51.1
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-17 94.4 58 74.1
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.7e-17 91.7 102 52.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.7e-16 90.9 91 53.8
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.3e-16 89.0 94 55.3
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-15 88.2 70 65.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 5.3e-15 85.9 53 77.4
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.1e-15 85.1 100 56.0
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.5e-14 84.3 82 54.9
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.4e-14 83.2 52 75.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 4.5e-14 82.8 53 75.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 4.5e-14 82.8 53 75.5
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 2.9e-13 80.1 94 46.8
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 8.5e-13 78.6 71 59.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-12 78.2 53 69.8
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 9.4e-12 75.1 171 33.9
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 7.9e-11 72.0 244 25.8
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.3e-10 70.5 153 35.3
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.0e-10 70.1 100 45.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 3.9e-10 69.7 234 27.4
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 3.9e-10 69.7 234 27.4
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.8e-10 68.6 83 45.8
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.6e-09 67.0 51 62.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 7.4e-09 65.5 78 47.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 9.7e-09 65.1 124 40.3
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 9.7e-09 65.1 87 42.5
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.4e-07 61.2 203 29.6


User provided reference genes

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