Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 7.7e-150 533.9 285 100.0
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.5e-108 396.0 286 78.3
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.0e-105 386.3 238 76.5
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.4e-105 385.2 241 75.9
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.7e-104 383.3 242 75.6
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.2e-104 382.9 241 75.1
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.9e-104 382.5 242 76.9
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.9e-104 382.5 285 76.8
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 4.9e-104 381.7 242 75.2
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.4e-104 381.3 285 76.1
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.1e-103 380.6 240 75.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 4.1e-103 378.6 237 77.2
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 4.1e-103 378.6 237 77.2
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.2e-102 377.1 287 74.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.6e-102 376.7 286 74.8
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.0e-102 376.3 287 74.6
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.7e-102 375.9 287 75.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.7e-102 375.9 241 74.7
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 2.7e-102 375.9 285 74.4
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.5e-102 375.6 242 74.4
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 6.0e-102 374.8 286 73.8
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.3e-101 373.6 240 74.6
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.3e-101 372.9 286 73.4
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.0e-101 371.7 244 73.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 5.0e-101 371.7 286 74.5
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-100 370.5 286 73.8
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 4.3e-100 368.6 241 74.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 7.3e-100 367.9 231 75.3
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.6e-99 366.7 287 72.8
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.6e-99 366.7 287 72.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.8e-99 365.9 297 71.0
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.8e-99 365.9 235 75.3
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.4e-98 363.6 289 73.7
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.4e-98 363.6 285 74.0
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.4e-98 363.6 236 74.2
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.2e-98 361.7 286 71.3
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 5.2e-98 361.7 239 72.8
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.9e-98 360.9 286 71.3
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 8.9e-98 360.9 284 71.5
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.2e-97 360.5 287 72.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.6e-97 359.4 286 70.6
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.4e-97 359.0 287 71.1
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 3.4e-97 359.0 286 72.4
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.4e-97 358.6 286 71.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.4e-97 358.6 287 71.1
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 9.8e-97 357.5 237 72.2
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.7e-96 356.7 286 73.1
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.7e-96 356.7 222 76.1
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.2e-96 356.3 262 67.9
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 8.3e-96 354.4 244 71.7
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.1e-95 354.0 240 71.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.1e-95 354.0 235 72.8
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.4e-95 352.8 243 69.5
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.1e-95 352.1 290 73.1
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 4.1e-95 352.1 223 72.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.4e-95 351.7 243 69.1
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.2e-94 350.5 290 73.1
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.6e-94 350.1 286 72.4
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-94 350.1 241 70.1
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 2.1e-94 349.7 242 73.1
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.7e-94 349.4 287 71.8
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 3.5e-94 349.0 243 70.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 4.6e-94 348.6 286 71.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 6.0e-94 348.2 284 72.5
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.7e-93 346.7 342 63.7
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 3.9e-93 345.5 246 69.9
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.9e-93 345.5 238 70.2
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.9e-92 343.2 241 69.7
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.9e-92 343.2 244 69.3
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.5e-92 342.8 245 69.4
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.5e-92 342.8 245 69.4
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 3.3e-92 342.4 246 69.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.6e-92 341.7 239 68.6
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.2e-91 340.5 244 69.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-91 340.1 243 70.4
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.6e-91 340.1 245 69.4
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 2.1e-91 339.7 232 70.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 6.2e-91 338.2 286 68.2
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 8.1e-91 337.8 236 70.3
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.8e-90 336.7 245 67.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 5.2e-90 335.1 241 68.0
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.2e-89 334.0 242 69.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.0e-89 333.2 286 68.9
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.6e-89 332.8 243 68.7
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 9.9e-89 330.9 247 67.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.3e-88 330.5 288 70.1
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.7e-88 330.1 247 67.6
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-87 327.4 225 69.8
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-87 326.2 275 60.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 9.2e-87 324.3 263 64.3
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.3e-85 320.5 239 66.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.3e-85 320.5 234 67.9
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.7e-85 320.1 211 73.9
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.0e-85 319.3 247 66.4
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.5e-84 317.0 234 66.2
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 2.5e-84 316.2 226 67.3
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.3e-84 315.8 240 66.2
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 3.3e-84 315.8 209 71.8
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.3e-84 315.5 286 67.5
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.6e-83 313.5 245 65.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.8e-82 310.1 222 68.0
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 8.9e-82 307.8 248 65.3
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.0e-81 306.6 246 65.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.6e-81 306.2 249 65.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.4e-81 305.4 244 62.3
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 9.9e-81 304.3 249 65.9
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.2e-80 303.1 247 64.8
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.4e-79 300.4 238 66.0
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.4e-79 299.7 251 64.1
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.4e-79 299.7 246 64.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 7.1e-79 298.1 286 63.3
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 9.2e-79 297.7 242 63.6
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 2.7e-78 296.2 249 63.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.0e-77 294.3 240 62.9
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.0e-77 294.3 244 62.3
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.9e-74 281.6 235 60.9
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 8.4e-72 274.6 233 63.1
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.4e-71 271.9 193 68.4
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 4.6e-70 268.9 237 59.5
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.7e-69 266.9 198 66.7
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.5e-68 263.1 198 66.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.3e-68 262.7 184 70.7
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.6e-67 260.4 185 68.1
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 2.6e-65 253.1 245 55.9
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 7.6e-65 251.5 218 61.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 6.4e-64 248.4 228 68.0
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.4e-63 246.5 244 57.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 6.7e-61 238.4 246 52.8
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.3e-60 236.1 235 55.3
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.5e-55 219.9 250 49.6
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.8e-53 213.8 202 55.9
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 4.3e-44 182.6 243 56.0
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 2.0e-41 173.7 128 67.2
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 5.5e-39 165.6 154 51.9
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.9e-33 145.6 267 37.8
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 7.2e-31 138.7 255 36.9
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.7e-30 136.7 245 37.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 5.7e-28 129.0 221 38.9
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 7.4e-28 128.6 254 35.4
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.8e-27 126.7 222 37.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 3.7e-27 126.3 207 43.5
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.8e-26 124.0 219 36.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 7.7e-25 118.6 233 36.5
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.9e-24 116.7 231 37.2
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.9e-23 114.0 226 36.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 3.2e-23 113.2 53 96.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.2e-23 112.1 223 34.1
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.2e-22 111.3 233 35.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 4.7e-22 109.4 236 33.5
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.1e-22 109.0 225 34.7
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 8.0e-22 108.6 230 35.2
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.0e-22 108.6 232 34.9
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.4e-21 107.8 245 35.9
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.9e-21 106.3 223 33.6
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.5e-20 104.4 230 33.0
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.7e-19 99.8 209 34.4
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 4.1e-18 96.3 259 34.0
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 7.7e-17 92.0 56 73.2
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 5.0e-16 89.4 55 70.9
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.1e-15 88.2 250 30.4
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.1e-15 88.2 256 29.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.5e-15 87.8 200 35.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.9e-15 87.4 45 84.4
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.4e-13 81.3 204 32.4
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.3e-13 80.5 174 36.2
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 6.3e-11 72.4 177 35.0
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.4e-10 71.2 102 43.1
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 5.3e-10 69.3 149 33.6
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.6e-09 67.8 237 26.6
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 7.7e-09 65.5 51 52.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 2.9e-08 63.5 48 54.2
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.5e-08 62.0 30 76.7
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.1e-07 61.6 40 57.5
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.5e-07 60.5 47 57.4
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.1e-06 57.4 46 52.2
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 4.7e-06 56.2 54 44.4


User provided reference genes

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