Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold390G50588 Striga asiatica HOM05D000082 ORTHO05D000038 1.1e-99 366.7 202 100.0
SGA_v2.0_scaffold47G17499 Striga asiatica HOM05D000082 ORTHO05D000038 1.1e-57 227.3 194 70.6
Migut.N03169 Erythranthe guttata HOM05D000082 ORTHO05D000038 2.5e-38 162.9 153 60.8
Peaxi162Scf00072g00054 Petunia axillaris HOM05D000082 ORTHO05D000038 5.8e-35 151.8 127 64.6
Cc10_g01520 Coffea canephora HOM05D000082 ORTHO05D000038 1.3e-34 150.6 153 57.5
Oeu007358.1 Olea europaea HOM05D000082 ORTHO05D000038 1.9e-33 146.7 128 60.9
Prupe.1G363700 Prunus persica HOM05D000082 ORTHO05D000038 1.6e-32 143.7 132 57.6
MD08G1011000 Malus domestica HOM05D000082 ORTHO05D000038 1.0e-31 141.0 146 51.4
RcHm_v2.0_Chr6g0303101 Rosa chinensis HOM05D000082 ORTHO05D000038 1.0e-31 141.0 147 56.5
Ciclev10001606m.g Citrus clementina HOM05D000082 ORTHO05D000038 2.3e-31 139.8 143 54.5
Atru.chr13.269 Acer truncatum HOM05D000082 ORTHO05D000038 3.9e-31 139.0 140 56.4
Nitab4.5_0009402g0010 Nicotiana tabacum HOM05D000082 ORTHO05D000038 6.6e-31 138.3 126 60.3
TAR625G0374 Trochodendron aralioides HOM05D000082 ORTHO05D000038 6.6e-31 138.3 158 53.8
CAN.G1076.32 Capsicum annuum HOM05D000082 ORTHO05D000038 8.7e-31 137.9 123 57.7
Cpa.g.sc26.313 Carica papaya HOM05D000082 ORTHO05D000038 8.7e-31 137.9 127 57.5
FAN27G0304 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.5e-30 137.1 142 53.5
Dinv31861 Davidia involucrata HOM05D006069 ORTHO05D000038 3.3e-30 136.0 129 58.9
Lj4C22T17 Lonicera japonica HOM05D000082 ORTHO05D000038 5.6e-30 135.2 127 59.1
FAN20G2922 Fragaria x ananassa HOM05D000082 ORTHO05D000038 9.6e-30 134.4 143 53.1
FAN15G1934 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.6e-29 133.7 156 51.3
Cfa013968 Carpinus fangiana HOM05D000082 ORTHO05D000038 4.8e-29 132.1 146 51.4
TWI56G0761 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 6.2e-29 131.7 157 49.0
PGR031G3416 Punica granatum HOM05D000082 ORTHO05D000038 1.1e-28 131.0 128 55.5
Sopen09g029310 Solanum pennellii HOM05D000082 ORTHO05D000038 1.1e-28 131.0 129 57.4
TAR381G0957 Trochodendron aralioides HOM05D000082 ORTHO05D000038 1.1e-28 131.0 123 56.1
Nitab4.5_0000575g0230 Nicotiana tabacum HOM05D000082 ORTHO05D000038 1.8e-28 130.2 129 56.6
Rhsim06G0020000 Rhododendron simsii HOM05D000082 ORTHO05D000038 1.8e-28 130.2 131 58.0
CSS0015812 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 2.4e-28 129.8 125 57.6
Haze_22651 Corylus avellana HOM05D000082 ORTHO05D000038 2.4e-28 129.8 162 50.6
PGSC0003DMG400031865 Solanum tuberosum HOM05D000082 ORTHO05D000038 2.4e-28 129.8 157 51.6
Oeu054484.1 Olea europaea HOM05D000082 ORTHO05D000038 5.3e-28 128.6 179 47.5
MD15G1011000 Malus domestica HOM05D000082 ORTHO05D000038 9.0e-28 127.9 165 47.3
Solyc09g074460.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 1.5e-27 127.1 129 55.8
FvH4_2g38280 Fragaria vesca HOM05D000082 ORTHO05D000038 7.6e-27 124.8 144 50.0
MSTRG.24239 Avicennia marina HOM05D000082 ORTHO05D000038 2.9e-26 122.9 117 54.7
TAR628G0501 Trochodendron aralioides HOM05D000082 ORTHO05D000038 3.8e-26 122.5 167 47.9
Manes.05G145800 Manihot esculenta HOM05D000082 ORTHO05D000038 4.9e-26 122.1 120 56.7
CiPaw.07G148300 Carya illinoinensis HOM05D000082 ORTHO05D000038 6.4e-26 121.7 123 50.4
Phvul.007G014100 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 3.2e-25 119.4 159 47.2
Actinidia22314 Actinidia chinensis HOM05D000082 ORTHO05D000038 7.1e-25 118.2 158 48.7
Medtr1g114620 Medicago truncatula HOM05D000082 ORTHO05D000038 1.2e-24 117.5 173 45.7
AUR62041485 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.1e-24 116.7 166 47.0
QL02p011949 Quercus lobata HOM05D000082 ORTHO05D000038 2.1e-24 116.7 120 53.3
VMungo0720G0321 Vigna mungo HOM05D000082 ORTHO05D000038 2.7e-24 116.3 156 46.8
Glyma.10G286700 Glycine max HOM05D000082 ORTHO05D000038 3.9e-23 112.5 122 51.6
Glyma.20G102400 Glycine max HOM05D000082 ORTHO05D000038 3.9e-23 112.5 118 50.8
Ca_11263_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 5.1e-23 112.1 125 50.4
Lsat_1_v5_gn_0_1340 Lactuca sativa HOM05D000082 ORTHO05D000038 5.1e-23 112.1 154 47.4
EL10Ac1g02173 Beta vulgaris HOM05D000082 ORTHO05D000038 6.7e-23 111.7 130 52.3
Lj5g0011695 Lotus japonicus HOM05D000082 ORTHO05D000038 6.7e-23 111.7 127 47.2
TPR.G4089 Trifolium pratense HOM05D000082 ORTHO05D000038 1.1e-22 110.9 138 45.7
Psat6g234240 Pisum sativum HOM05D000082 ORTHO05D000038 7.4e-22 108.2 155 44.5
Oeu046284.1 Olea europaea HOM05D000082 ORTHO05D000038 1.3e-21 107.5 149 45.6
Oeu046283.1 Olea europaea HOM05D000082 ORTHO05D000038 2.8e-21 106.3 163 44.2
GSVIVG01009934001 Vitis vinifera HOM05D000082 ORTHO05D000038 3.7e-21 105.9 112 50.9
Eucgr.H00970 Eucalyptus grandis HOM05D000082 ORTHO05D000038 4.8e-21 105.5 103 54.4
PSO541G5415 Papaver somniferum HOM05D000082 ORTHO05D000038 6.2e-21 105.1 148 43.9
Sc15g0004890 Simmondsia chinensis HOM05D000082 ORTHO05D000038 6.2e-21 105.1 121 51.2
Lalb_Chr21g0307061 Lupinus albus HOM05D000082 ORTHO05D000038 8.1e-21 104.8 117 48.7
AUR62040547 Chenopodium quinoa HOM05D000082 ORTHO05D000038 1.1e-20 104.4 167 42.5
PSO675G3305 Papaver somniferum HOM05D000082 ORTHO05D000038 1.8e-20 103.6 170 41.8
ECA233G2881 Erigeron canadensis HOM05D000082 ORTHO05D000038 6.9e-20 101.7 163 41.7
HanXRQChr11g0322711 Helianthus annuus HOM05D000082 ORTHO05D000038 6.9e-20 101.7 149 43.6
arahy.Tifrunner.gnm1.ann1.1ZYH04 Arachis hypogaea HOM05D000082 ORTHO05D000038 6.5e-18 95.1 92 56.5
Sc02g0008630 Simmondsia chinensis HOM05D000082 ORTHO05D000038 6.5e-18 95.1 145 42.8
HanXRQChr12g0366841 Helianthus annuus HOM05D000082 ORTHO05D000038 8.4e-18 94.7 111 48.6
Ah.00g000270 Amaranthus hybridus HOM05D000082 ORTHO05D000038 4.2e-17 92.4 83 56.6
Lalb_Chr06g0163961 Lupinus albus HOM05D000082 ORTHO05D000038 7.1e-17 91.7 105 45.7
THA.LOC104806877 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.6e-16 90.5 128 42.2
Aqoxy6G02256 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 1.3e-15 87.4 140 39.3
Lsat_1_v5_gn_2_12880 Lactuca sativa HOM05D000082 ORTHO05D000038 4.3e-14 82.4 122 42.6
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 1.3e-13 80.9 130 44.6
Medtr5g008660 Medicago truncatula HOM05D000082 ORTHO05D000038 2.1e-13 80.1 82 51.2
Thhalv10005668m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 4.8e-13 79.0 111 43.2
Sp2g28000 Schrenkiella parvula HOM05D000082 ORTHO05D000038 1.1e-12 77.8 99 44.4
AT5G64920 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 4.1e-12 75.9 123 39.8
Carub.0008s2575 Capsella rubella HOM05D000082 ORTHO05D000038 6.9e-12 75.1 157 36.9
CARHR278960 Cardamine hirsuta HOM05D000082 ORTHO05D000038 2.0e-11 73.6 125 39.2
AL8G42420 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 3.4e-11 72.8 124 39.5
A09p08890 Brassica napus HOM05D000082 ORTHO05D000038 1.3e-10 70.9 91 41.8
BraA09t36540Z Brassica rapa HOM05D000082 ORTHO05D000038 1.3e-10 70.9 91 41.8
BcaB04g19999 Brassica carinata HOM05D000082 ORTHO05D000038 1.9e-09 67.0 114 39.5
C09p10310 Brassica napus HOM05D000082 ORTHO05D000038 2.5e-09 66.6 102 39.2
BcaC04g23274 Brassica carinata HOM05D000082 ORTHO05D000038 3.2e-09 66.2 102 39.2
BolC9t53931H Brassica oleracea HOM05D000082 ORTHO05D000038 3.2e-09 66.2 102 39.2
DCAR_013877 Daucus carota HOM05D006069 ORTHO05D000038 4.3e-06 55.8 118 34.7
Lsat_1_v5_gn_9_64961 Lactuca sativa HOM05D000082 ORTHO05D001639 4.3e-06 55.8 92 32.6
Hund01601 Selenicereus undatus HOM05D000082 ORTHO05D000038 7.4e-06 55.1 106 34.9


User provided reference genes

Program Settings