Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 0.0e+00 1106.3 550 100.0
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 2.2e-185 652.9 411 78.3
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 8.9e-179 630.9 406 75.6
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.3e-177 627.1 420 75.0
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.5e-170 603.6 410 71.5
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.0e-170 603.2 406 72.2
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.9e-169 599.4 410 71.7
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.2e-168 595.9 406 71.7
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 9.2e-168 594.3 406 71.9
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 6.8e-163 578.2 406 68.5
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.9e-162 574.3 408 70.1
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 7.1e-160 568.2 405 68.6
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 2.7e-159 566.2 410 69.5
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.7e-159 566.2 409 69.4
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 7.8e-159 564.7 406 69.7
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.9e-158 562.4 408 68.9
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 5.1e-158 562.0 406 69.7
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.5e-157 560.5 466 61.6
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 2.5e-157 559.7 405 67.9
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 7.3e-157 558.1 406 69.0
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 7.3e-157 558.1 409 68.0
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.6e-156 557.0 405 69.1
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.7e-156 555.4 406 66.7
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 8.1e-156 554.7 406 66.7
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.4e-155 553.9 412 67.0
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.8e-155 553.5 406 69.2
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 2.4e-155 553.1 405 65.7
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 3.1e-155 552.7 407 67.1
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 5.2e-155 552.0 405 67.9
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 6.9e-155 551.6 405 66.7
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 4.4e-154 548.9 406 66.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.7e-153 547.0 406 67.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 4.9e-153 545.4 405 65.9
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 4.9e-153 545.4 406 65.8
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 6.4e-153 545.0 406 67.2
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.4e-152 543.9 407 65.6
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.9e-152 543.5 410 65.6
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.9e-152 543.5 407 65.4
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 3.2e-152 542.7 413 64.4
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.2e-151 540.8 407 65.4
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.6e-151 540.4 449 61.0
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.7e-151 539.7 414 64.3
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 7.8e-151 538.1 411 65.9
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.0e-150 537.7 409 66.5
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 5.1e-150 535.4 402 65.9
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 8.7e-150 534.6 417 63.5
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.5e-149 533.1 409 65.8
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 5.6e-149 531.9 409 65.8
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.6e-149 531.2 406 65.8
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 4.8e-148 528.9 409 63.8
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.4e-147 527.3 406 64.0
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.4e-147 527.3 406 64.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.0e-147 525.8 402 64.4
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 5.3e-147 525.4 413 64.4
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 6.9e-147 525.0 406 63.8
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 6.9e-147 525.0 407 63.6
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 9.0e-147 524.6 365 69.9
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.0e-146 523.5 412 63.6
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 2.0e-146 523.5 400 64.5
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.6e-146 523.1 406 64.3
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 5.8e-146 521.9 406 62.8
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 5.8e-146 521.9 406 64.0
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 7.6e-146 521.5 408 63.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.9e-145 519.6 400 64.5
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 2.9e-145 519.6 407 63.1
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 4.9e-145 518.8 408 62.0
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.4e-144 516.5 408 61.8
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 5.4e-144 515.4 407 62.9
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 7.1e-144 515.0 400 64.2
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.1e-143 513.5 406 62.6
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 4.6e-143 512.3 406 63.3
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 7.9e-143 511.5 419 60.9
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.9e-143 511.5 394 64.2
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-142 510.8 410 62.0
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 3.9e-142 509.2 408 61.5
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 5.1e-142 508.8 387 64.9
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 8.7e-142 508.1 406 62.3
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.1e-141 507.7 407 62.7
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.5e-141 507.3 430 60.7
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 4.3e-141 505.8 406 62.1
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.3e-141 505.8 407 62.7
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.3e-141 505.8 400 64.0
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 7.4e-141 505.0 410 62.2
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 7.4e-141 505.0 410 62.2
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 7.4e-141 505.0 430 59.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.6e-140 503.8 407 60.7
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.8e-139 500.4 397 63.0
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.8e-139 500.4 399 63.7
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 5.3e-139 498.8 413 60.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 4.5e-138 495.7 526 53.0
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.7e-137 493.8 408 62.5
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 8.7e-134 481.5 369 64.8
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.1e-131 474.6 413 58.4
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 9.0e-131 471.5 407 60.2
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 6.5e-129 465.3 439 56.9
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 6.5e-129 465.3 439 56.9
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.4e-128 464.2 406 57.4
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 1.6e-127 460.7 403 60.3
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 6.0e-127 458.8 409 57.5
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.3e-126 457.6 400 58.2
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 5.1e-126 455.7 346 63.6
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.1e-125 454.5 404 56.7
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 2.5e-125 453.4 400 57.8
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.2e-124 450.3 404 57.7
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.8e-124 449.1 389 58.1
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 5.9e-122 442.2 334 63.2
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 9.4e-120 434.9 368 60.9
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-119 434.5 400 57.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 4.6e-119 432.6 410 54.9
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 3.3e-117 426.4 399 55.6
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.3e-117 426.0 402 55.2
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.1e-115 421.4 399 55.4
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.4e-115 420.2 402 55.0
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.9e-113 413.3 321 63.9
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.2e-112 409.8 404 53.7
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 7.2e-112 408.7 404 53.5
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 3.6e-111 406.4 251 74.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.4e-110 404.4 386 53.6
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.3e-110 403.7 401 54.1
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 3.9e-110 402.9 364 57.1
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 7.4e-109 398.7 405 52.3
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.1e-107 394.8 330 59.4
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 5.9e-106 389.0 324 59.9
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.2e-105 387.1 407 50.6
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.4e-104 384.4 407 50.1
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.0e-102 378.3 407 50.4
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 3.9e-102 376.3 407 52.6
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 6.7e-102 375.6 359 54.3
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 6.7e-102 375.6 359 54.3
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-101 374.4 359 54.0
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 9.7e-101 371.7 402 50.0
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.8e-100 370.2 392 48.7
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.5e-98 362.8 261 70.9
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-96 357.8 263 66.2
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 4.2e-96 356.3 359 52.4
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.5e-93 347.8 340 54.1
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.7e-93 345.9 271 63.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.8e-92 342.8 272 59.9
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 3.2e-88 330.1 341 51.3
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.4e-88 328.6 232 66.4
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 4.7e-87 326.2 394 43.7
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.2e-86 322.8 258 60.5
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 8.3e-84 315.5 396 43.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.4e-83 313.9 253 59.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 7.0e-83 312.4 402 40.5
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.6e-82 311.2 409 41.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.3e-80 303.5 263 56.7
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.5e-69 268.1 281 52.0
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.9e-68 263.8 195 64.6
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 5.4e-67 259.6 364 42.9
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 9.5e-64 248.8 155 71.6
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 8.6e-57 225.7 443 34.8
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 7.6e-45 186.0 129 76.7
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.0e-41 175.6 177 57.1
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 1.8e-38 164.9 369 32.0
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 6.9e-38 162.9 130 66.9
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.0e-37 161.4 470 28.3
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 7.8e-34 149.4 126 63.5
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.0e-33 147.5 106 67.0
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 8.1e-31 139.4 377 30.0
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 9.0e-30 136.0 303 32.0
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 2.6e-29 134.4 303 32.3
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 5.4e-27 126.7 326 26.7
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.3e-22 110.2 91 64.8
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 4.9e-20 103.6 68 67.6
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.4e-19 102.1 68 73.5
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.0e-17 95.9 113 46.9
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.8e-15 87.0 71 60.6
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.0e-14 84.0 71 60.6
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 2.3e-09 68.2 44 81.8
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 5.1e-09 67.0 59 54.2
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 9.7e-08 62.8 79 46.8
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 1.6e-07 62.0 132 32.6


User provided reference genes

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