Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold38G15017 Striga asiatica HOM05D026572 ORTHO05D002376 6.5e-182 640.6 317 100.0
SGA_v2.0_scaffold252G45102 Striga asiatica HOM05D026572 ORTHO05D002376 4.1e-67 259.2 169 82.2
SGA_v2.0_scaffold266G46144 Striga asiatica HOM05D026572 ORTHO05D002376 1.5e-45 187.6 112 83.9
SGA_v2.0_scaffold237G43840 Striga asiatica HOM05D010852 ORTHO05D002376 5.0e-33 146.0 291 33.7
SGA_v2.0_scaffold29G12331 Striga asiatica HOM05D010852 ORTHO05D002376 2.3e-30 137.1 323 31.9
SGA_v2.0_scaffold59G20735 Striga asiatica HOM05D010852 ORTHO05D002376 4.5e-26 122.9 323 29.7
SGA_v2.0_scaffold250G44995 Striga asiatica HOM05D010852 ORTHO05D002376 1.5e-24 117.9 305 29.2
SGA_v2.0_scaffold56G19931 Striga asiatica HOM05D010852 ORTHO05D002376 8.3e-20 102.1 248 28.6
SGA_v2.0_scaffold49G18177 Striga asiatica HOM05D010852 ORTHO05D002376 1.4e-19 101.3 281 28.1
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 1.8e-19 100.9 295 27.5
arahy.Tifrunner.gnm1.ann1.8J8DAZ Arachis hypogaea HOM05D002441 ORTHO05D002376 4.1e-19 99.8 202 31.7
arahy.Tifrunner.gnm1.ann1.Y0MAT2 Arachis hypogaea HOM05D002441 ORTHO05D002376 9.2e-19 98.6 216 28.7
SGA_v2.0_scaffold185G40046 Striga asiatica HOM05D011754 ORTHO05D014689 3.5e-18 96.7 236 30.9
arahy.Tifrunner.gnm1.ann1.8R9H6F Arachis hypogaea HOM05D002441 ORTHO05D002376 7.8e-18 95.5 236 28.0
Nitab4.5_0004863g0020 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.0e-17 92.8 173 28.9
arahy.Tifrunner.gnm1.ann1.PUQ8PF Arachis hypogaea HOM05D002441 ORTHO05D002376 8.6e-17 92.0 219 29.7
SGA_v2.0_scaffold237G43867 Striga asiatica HOM05D010852 ORTHO05D002376 8.6e-17 92.0 193 28.0
SGA_v2.0_scaffold26G11253 Striga asiatica HOM05D010852 ORTHO05D002376 1.1e-16 91.7 271 29.5
Peaxi162Scf00006g02913 Petunia axillaris HOM05D002441 ORTHO05D002376 1.5e-16 91.3 235 28.1
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 5.6e-16 89.4 231 28.6
arahy.Tifrunner.gnm1.ann1.AFNT1S Arachis hypogaea HOM05D002441 ORTHO05D002376 1.2e-15 88.2 232 26.3
arahy.Tifrunner.gnm1.ann1.I5QAZJ Arachis hypogaea HOM05D002441 ORTHO05D002376 1.2e-15 88.2 219 26.9
arahy.Tifrunner.gnm1.ann1.11NDG0 Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.40UDPE Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.FKF8NN Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.G1FX5D Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.HTKL5C Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.IQTA4G Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.PWRV1I Arachis hypogaea HOM05D002441 ORTHO05D002376 2.1e-15 87.4 219 26.5
arahy.Tifrunner.gnm1.ann1.1X530R Arachis hypogaea HOM05D002441 ORTHO05D002376 3.6e-15 86.7 279 23.7
arahy.Tifrunner.gnm1.ann1.DBF1B4 Arachis hypogaea HOM05D002441 ORTHO05D002376 3.6e-15 86.7 310 26.1
arahy.Tifrunner.gnm1.ann1.U0JAJ0 Arachis hypogaea HOM05D002441 ORTHO05D002376 3.6e-15 86.7 310 26.1
CAN.G358.51 Capsicum annuum HOM05D002441 ORTHO05D002376 3.6e-15 86.7 189 29.1
arahy.Tifrunner.gnm1.ann1.U768Z5 Arachis hypogaea HOM05D002441 ORTHO05D002376 8.0e-15 85.5 249 22.5
arahy.Tifrunner.gnm1.ann1.BHW5G9 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.8e-14 84.3 279 24.4
arahy.Tifrunner.gnm1.ann1.XQZ42W Arachis hypogaea HOM05D002441 ORTHO05D002376 1.8e-14 84.3 279 24.4
SGA_v2.0_scaffold221G42656 Striga asiatica HOM05D010852 ORTHO05D002376 1.8e-14 84.3 272 28.7
SGA_v2.0_scaffold67G22781 Striga asiatica HOM05D011754 ORTHO05D014689 2.3e-14 84.0 150 31.3
arahy.Tifrunner.gnm1.ann1.3JX2I6 Arachis hypogaea HOM05D002441 ORTHO05D002376 4.0e-14 83.2 279 24.4
SGA_v2.0_scaffold69G23109 Striga asiatica HOM05D011787 ORTHO05D008317 5.2e-14 82.8 163 33.1
arahy.Tifrunner.gnm1.ann1.BDM5B3 Arachis hypogaea HOM05D002441 ORTHO05D002376 1.5e-13 81.3 310 25.5
arahy.Tifrunner.gnm1.ann1.33R3MR Arachis hypogaea HOM05D002441 ORTHO05D002376 2.0e-13 80.9 234 26.5
Nitab4.5_0002702g0050 Nicotiana tabacum HOM05D002441 ORTHO05D002376 2.0e-13 80.9 236 25.8
arahy.Tifrunner.gnm1.ann1.H67YCB Arachis hypogaea HOM05D002441 ORTHO05D002376 5.7e-13 79.3 167 29.9
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 5.7e-13 79.3 244 25.0
A05p27520 Brassica napus HOM05D000353 ORTHO05D000174 1.7e-12 77.8 327 24.8
Nitab4.5_0000305g0130 Nicotiana tabacum HOM05D002441 ORTHO05D008317 4.9e-12 76.3 147 34.7
arahy.Tifrunner.gnm1.ann1.G9S7AV Arachis hypogaea HOM05D002441 ORTHO05D002376 8.3e-12 75.5 147 32.7
Nitab4.5_0004405g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 8.3e-12 75.5 166 26.5
CAN.G764.9 Capsicum annuum HOM05D002441 ORTHO05D002376 1.1e-11 75.1 168 30.4
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 1.4e-11 74.7 165 32.7
arahy.Tifrunner.gnm1.ann1.36ZJIB Arachis hypogaea HOM05D002441 ORTHO05D002376 4.1e-11 73.2 185 29.2
arahy.Tifrunner.gnm1.ann1.EPMR0G Arachis hypogaea HOM05D002441 ORTHO05D002376 5.4e-11 72.8 216 24.1
arahy.Tifrunner.gnm1.ann1.18WZIV Arachis hypogaea HOM05D002441 ORTHO05D002376 9.2e-11 72.0 263 26.6
Nitab4.5_0021602g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 2.0e-10 70.9 118 34.7
arahy.Tifrunner.gnm1.ann1.K3U0KS Arachis hypogaea HOM05D002441 ORTHO05D002376 3.5e-10 70.1 218 23.9
C04p18340 Brassica napus HOM05D000313 ORTHO05D000065 1.0e-09 68.6 125 29.6
CAN.G598.12 Capsicum annuum HOM05D002441 ORTHO05D002376 1.0e-09 68.6 123 31.7
arahy.Tifrunner.gnm1.ann1.D5SYT8 Arachis hypogaea HOM05D002441 ORTHO05D002376 2.3e-09 67.4 147 29.3
SGA_v2.0_scaffold49G18365 Striga asiatica HOM05D024561 ORTHO05D002376 2.3e-09 67.4 165 31.5
BcaC06g36665 Brassica carinata HOM05D000313 ORTHO05D000065 5.0e-09 66.2 125 28.8
BolC7t40570H Brassica oleracea HOM05D000313 ORTHO05D000065 5.0e-09 66.2 125 28.8
C03p79730 Brassica napus HOM05D000313 ORTHO05D000065 8.6e-09 65.5 125 28.0
SGA_v2.0_scaffold241G44194 Striga asiatica HOM05D011787 ORTHO05D008317 8.6e-09 65.5 118 28.0
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 1.5e-08 64.7 212 25.0
BolC4t25352H Brassica oleracea HOM05D000353 ORTHO05D000174 2.5e-08 63.9 246 24.0
arahy.Tifrunner.gnm1.ann1.D8EMDP Arachis hypogaea HOM05D002441 ORTHO05D002376 3.3e-08 63.5 107 32.7
Sopen01g012720 Solanum pennellii HOM05D002907 ORTHO05D005554 3.3e-08 63.5 164 29.9
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 3.3e-08 63.5 248 21.0
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 3.3e-08 63.5 174 28.2
Peaxi162Scf01370g00020 Petunia axillaris HOM05D002907 ORTHO05D005554 4.3e-08 63.2 268 25.7
SGA_v2.0_scaffold101G29754 Striga asiatica HOM05D011754 ORTHO05D014689 4.3e-08 63.2 229 24.9
A07p14660 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-08 62.8 125 28.0
C02p40980 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-08 62.8 125 28.0
BraA07t29209Z Brassica rapa HOM05D000313 ORTHO05D000065 5.6e-08 62.8 125 28.0
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 5.6e-08 62.8 263 25.1
SGA_v2.0_scaffold82G26258 Striga asiatica HOM05D010852 ORTHO05D002376 5.6e-08 62.8 100 34.0
TPR.G8849 Trifolium pratense HOM05D007499 ORTHO05D009491 5.6e-08 62.8 218 27.5
BcaNung03865 Brassica carinata HOM05D000313 ORTHO05D000065 7.3e-08 62.4 205 20.0
Nitab4.5_0002746g0010 Nicotiana tabacum HOM05D002907 ORTHO05D005554 7.3e-08 62.4 125 32.0
BcaC02g09046 Brassica carinata HOM05D000353 ORTHO05D000174 1.6e-07 61.2 229 25.3
C07p23830 Brassica napus HOM05D000313 ORTHO05D000065 1.6e-07 61.2 125 28.0
Peaxi162Scf00073g02336 Petunia axillaris HOM05D002907 ORTHO05D005554 1.6e-07 61.2 254 26.0
Peaxi162Scf00661g00421 Petunia axillaris HOM05D002907 ORTHO05D005554 1.6e-07 61.2 254 26.0
A01p33560 Brassica napus HOM05D000313 ORTHO05D000065 2.8e-07 60.5 125 28.0
C01p35750 Brassica napus HOM05D000313 ORTHO05D000065 2.8e-07 60.5 125 26.4
BolC1t03534H Brassica oleracea HOM05D000313 ORTHO05D000065 2.8e-07 60.5 125 26.4
Nitab4.5_0002986g0060 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.8e-07 60.5 267 24.7
Sopen11g022000 Solanum pennellii HOM05D002907 ORTHO05D005554 2.8e-07 60.5 215 27.4
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.6e-07 60.1 230 23.5
Medtr2g450060 Medicago truncatula HOM05D002090 ORTHO05D001923 3.6e-07 60.1 198 23.7
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 3.6e-07 60.1 291 21.0
C06p15640 Brassica napus HOM05D000353 ORTHO05D000174 4.7e-07 59.7 254 22.8
Sopen09g023780 Solanum pennellii HOM05D002907 ORTHO05D005554 4.7e-07 59.7 215 27.4
BcaB05g23882 Brassica carinata HOM05D000353 ORTHO05D010037 6.2e-07 59.3 241 24.5
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 6.2e-07 59.3 145 29.7
BraA05t20759Z Brassica rapa HOM05D000305 ORTHO05D000065 8.0e-07 58.9 180 25.6
TPR.G19823 Trifolium pratense HOM05D011527 ORTHO05D009491 8.0e-07 58.9 225 27.1
BcaNung02333 Brassica carinata HOM05D000313 ORTHO05D000065 1.4e-06 58.2 176 21.0
SGA_v2.0_scaffold44G16632 Striga asiatica HOM05D010852 ORTHO05D002376 1.4e-06 58.2 101 34.7
Nitab4.5_0001129g0140 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.8e-06 57.8 88 36.4
TPR.G12414 Trifolium pratense HOM05D000001 ORTHO05D000424 1.8e-06 57.8 140 25.0
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 2.3e-06 57.4 255 24.7
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-06 57.4 206 25.2
A03p61800 Brassica napus HOM05D000313 ORTHO05D000065 3.1e-06 57.0 127 24.4
A07p36560 Brassica napus HOM05D000353 ORTHO05D000174 3.1e-06 57.0 327 22.0
A03p66100 Brassica napus HOM05D000353 ORTHO05D000174 4.0e-06 56.6 255 24.7
A05p24550 Brassica napus HOM05D000353 ORTHO05D000174 4.0e-06 56.6 255 24.7
BraA02t05129Z Brassica rapa HOM05D000305 ORTHO05D000065 4.0e-06 56.6 127 27.6
CAN.G1537.11 Capsicum annuum HOM05D002441 ORTHO05D002376 4.0e-06 56.6 149 30.2
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 4.0e-06 56.6 127 26.0
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 4.0e-06 56.6 142 26.1
Peaxi162Scf00588g00038 Petunia axillaris HOM05D002441 ORTHO05D002376 5.2e-06 56.2 107 30.8
Solyc10g074430.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 5.2e-06 56.2 204 27.0
SGA_v2.0_scaffold53G19356 Striga asiatica HOM05D011787 ORTHO05D008317 5.2e-06 56.2 53 37.7
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 5.2e-06 56.2 139 24.5
BcaC07g37361 Brassica carinata HOM05D000313 ORTHO05D000065 6.8e-06 55.8 197 20.8
Nitab4.5_0010353g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 6.8e-06 55.8 145 26.2
CAN.G1212.9 Capsicum annuum HOM05D002441 ORTHO05D002376 8.9e-06 55.5 178 23.6


User provided reference genes

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