Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 1.3e-67 259.6 136 100.0
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 4.3e-50 201.4 130 83.1
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.3e-38 163.3 132 68.9
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.9e-34 149.4 110 75.5
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 2.5e-34 149.1 133 60.2
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 2.8e-33 145.6 133 62.4
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 4.8e-33 144.8 133 60.9
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 1.8e-32 142.9 133 59.4
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 3.1e-32 142.1 116 69.0
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 3.4e-31 138.7 118 68.6
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 3.4e-31 138.7 128 64.8
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 1.0e-30 137.1 131 60.3
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 1.0e-30 137.1 128 64.1
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 1.0e-30 137.1 132 56.8
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.3e-30 136.7 118 66.9
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 2.2e-30 136.0 127 62.2
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 2.9e-30 135.6 128 63.3
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 8.4e-30 134.0 131 53.4
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 1.9e-29 132.9 131 53.4
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.9e-29 132.9 118 65.3
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.5e-29 132.5 103 71.8
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.6e-28 129.8 125 59.2
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 6.0e-28 127.9 128 57.8
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 6.0e-28 127.9 135 51.9
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 7.9e-28 127.5 103 68.9
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 3.0e-27 125.6 135 52.6
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 3.0e-27 125.6 134 52.2
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 3.9e-27 125.2 121 59.5
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 6.7e-27 124.4 139 51.8
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 8.7e-27 124.0 133 53.4
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 1.1e-26 123.6 136 51.5
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 1.5e-26 123.2 132 54.5
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 1.9e-26 122.9 136 52.9
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 1.9e-26 122.9 136 50.7
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 1.9e-26 122.9 136 50.7
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 1.9e-26 122.9 136 50.7
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 5.7e-26 121.3 136 50.7
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 5.7e-26 121.3 130 50.0
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 5.7e-26 121.3 130 50.0
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 7.4e-26 120.9 119 58.8
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 7.4e-26 120.9 133 51.1
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 7.4e-26 120.9 135 51.9
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 9.7e-26 120.6 133 49.6
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 9.7e-26 120.6 134 52.2
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 1.3e-25 120.2 136 50.7
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.6e-25 119.8 96 63.5
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 2.8e-25 119.0 132 50.8
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 2.8e-25 119.0 92 67.4
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 2.8e-25 119.0 129 51.2
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 2.8e-25 119.0 127 56.7
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 3.7e-25 118.6 134 50.0
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 4.8e-25 118.2 135 52.6
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 8.2e-25 117.5 132 49.2
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 1.1e-24 117.1 132 47.7
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 1.1e-24 117.1 131 49.6
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 1.4e-24 116.7 131 49.6
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 1.8e-24 116.3 132 50.0
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.8e-24 116.3 86 68.6
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 1.8e-24 116.3 131 51.9
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 2.4e-24 115.9 90 62.2
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 3.1e-24 115.5 131 48.9
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 3.1e-24 115.5 122 51.6
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 5.3e-24 114.8 125 52.0
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 5.3e-24 114.8 112 54.5
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 5.3e-24 114.8 131 48.1
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 6.9e-24 114.4 122 53.3
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 6.9e-24 114.4 124 52.4
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.5e-23 113.2 90 61.1
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.5e-23 113.2 134 50.0
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 2.0e-23 112.8 131 47.3
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 2.0e-23 112.8 132 49.2
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 2.6e-23 112.5 131 48.1
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 2.6e-23 112.5 131 47.3
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 2.6e-23 112.5 120 50.8
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 3.4e-23 112.1 131 48.1
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 3.4e-23 112.1 131 48.1
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 3.4e-23 112.1 124 54.0
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 3.4e-23 112.1 117 53.0
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 5.9e-23 111.3 111 53.2
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 7.6e-23 110.9 124 50.0
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 1.0e-22 110.5 132 48.5
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 1.0e-22 110.5 89 60.7
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 1.3e-22 110.2 130 51.5
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 1.7e-22 109.8 129 48.1
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 2.2e-22 109.4 131 46.6
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 2.2e-22 109.4 131 46.6
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 6.5e-22 107.8 134 47.0
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 6.5e-22 107.8 84 63.1
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 8.5e-22 107.5 120 49.2
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 1.1e-21 107.1 126 47.6
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 1.1e-21 107.1 87 60.9
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 2.5e-21 105.9 131 46.6
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 3.2e-21 105.5 103 51.5
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 7.2e-21 104.4 129 44.2
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.1e-20 102.8 133 45.1
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 2.7e-20 102.4 131 45.0
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 2.7e-20 102.4 119 50.4
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 2.7e-20 102.4 85 57.6
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.8e-19 99.8 89 52.8
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 1.8e-19 99.8 89 57.3
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 2.3e-19 99.4 142 46.5
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 8.8e-19 97.4 125 45.6
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 1.1e-18 97.1 72 68.1
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 3.3e-18 95.5 98 52.0
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 3.3e-18 95.5 125 48.0
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 1.3e-17 93.6 90 52.2
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 1.3e-17 93.6 89 51.7
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 3.7e-17 92.0 88 52.3
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 4.8e-17 91.7 119 45.4
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 4.8e-17 91.7 105 49.5
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.5e-15 86.7 64 68.8
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 4.5e-15 85.1 106 46.2
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.2e-14 82.8 64 68.8
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 2.9e-14 82.4 90 50.0
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 3.8e-14 82.0 101 49.5
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 5.0e-14 81.6 83 49.4
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 6.5e-14 81.3 89 52.8
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 4.2e-13 78.6 112 39.3
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 1.2e-12 77.0 80 50.0
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 2.1e-12 76.3 113 38.9
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 6.1e-12 74.7 78 50.0
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 1.5e-10 70.1 86 43.0
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 2.6e-07 59.3 117 31.6
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 2.6e-07 59.3 88 40.9
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 1.7e-06 56.6 43 55.8
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 1.7e-06 56.6 43 55.8


User provided reference genes

Program Settings