Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold38G14981 Striga asiatica HOM05D003361 ORTHO05D003760 4.2e-89 331.3 159 100.0
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 8.4e-21 104.4 125 53.6
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 3.9e-18 95.5 105 56.2
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 1.3e-13 80.5 103 51.5
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 2.9e-13 79.3 103 51.5
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.9e-12 76.6 106 50.0
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 2.4e-12 76.3 103 50.5
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 4.2e-12 75.5 103 48.5
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 5.4e-12 75.1 103 49.5
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.4e-12 75.1 103 49.5
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.4e-12 75.1 103 49.5
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.4e-12 75.1 103 49.5
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.1e-12 74.7 103 49.5
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 1.2e-11 73.9 144 38.9
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 1.2e-11 73.9 103 48.5
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 4.6e-11 72.0 105 45.7
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 4.6e-11 72.0 103 48.5
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 6.0e-11 71.6 105 46.7
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 6.0e-11 71.6 105 44.8
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 6.0e-11 71.6 105 43.8
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 7.9e-11 71.2 103 49.5
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 1.0e-10 70.9 103 48.5
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 1.3e-10 70.5 103 45.6
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 1.7e-10 70.1 100 47.0
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 2.3e-10 69.7 103 44.7
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 2.3e-10 69.7 103 46.6
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 2.3e-10 69.7 103 47.6
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 2.3e-10 69.7 103 48.5
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 2.3e-10 69.7 103 47.6
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 2.3e-10 69.7 101 46.5
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 3.0e-10 69.3 103 46.6
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 3.0e-10 69.3 103 45.6
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 3.0e-10 69.3 103 47.6
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 3.0e-10 69.3 103 47.6
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 3.9e-10 68.9 103 46.6
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 3.9e-10 68.9 103 46.6
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 5.1e-10 68.6 101 44.6
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 6.6e-10 68.2 107 43.9
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 8.7e-10 67.8 106 46.2
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 8.7e-10 67.8 103 45.6
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 1.1e-09 67.4 103 46.6
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 1.1e-09 67.4 103 47.6
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 48.5
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 48.5
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.5e-09 67.0 110 40.9
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 46.6
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 45.6
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 44.7
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 48.5
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.5e-09 67.0 99 44.4
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 42.7
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 45.6
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 46.6
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 1.5e-09 67.0 105 42.9
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.5e-09 67.0 103 42.7
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 1.9e-09 66.6 103 45.6
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 1.9e-09 66.6 102 49.0
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 1.9e-09 66.6 103 42.7
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.9e-09 66.6 105 42.9
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 2.5e-09 66.2 105 42.9
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 2.5e-09 66.2 103 45.6
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 2.5e-09 66.2 108 42.6
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 3.3e-09 65.9 103 45.6
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 4.3e-09 65.5 103 47.6
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 4.3e-09 65.5 103 44.7
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 5.6e-09 65.1 105 42.9
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 7.3e-09 64.7 103 45.6
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 7.3e-09 64.7 103 43.7
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 7.3e-09 64.7 103 43.7
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 7.3e-09 64.7 101 43.6
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 7.3e-09 64.7 103 44.7
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 7.3e-09 64.7 103 45.6
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 1.3e-08 63.9 101 42.6
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.3e-08 63.9 101 43.6
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.3e-08 63.9 103 45.6
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.3e-08 63.9 103 45.6
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 1.3e-08 63.9 103 45.6
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.3e-08 63.9 103 44.7
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.3e-08 63.9 105 42.9
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 1.3e-08 63.9 110 40.0
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 1.6e-08 63.5 103 45.6
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 2.1e-08 63.2 103 44.7
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 2.1e-08 63.2 103 44.7
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 2.1e-08 63.2 103 44.7
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 2.1e-08 63.2 103 44.7
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 2.1e-08 63.2 102 43.1
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 2.1e-08 63.2 103 44.7
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 2.1e-08 63.2 101 43.6
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 3.6e-08 62.4 105 41.9
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 4.8e-08 62.0 105 41.9
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 4.8e-08 62.0 103 43.7
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 4.8e-08 62.0 101 44.6
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 6.2e-08 61.6 105 41.0
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 6.2e-08 61.6 94 50.0
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 8.1e-08 61.2 105 41.9
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 8.1e-08 61.2 100 44.0
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 8.1e-08 61.2 107 44.9
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 1.1e-07 60.8 103 38.8
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.4e-07 60.5 103 41.7
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.8e-07 60.1 103 44.7
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.8e-07 60.1 101 45.5
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 2.4e-07 59.7 103 42.7
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 3.1e-07 59.3 103 41.7
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 3.1e-07 59.3 104 44.2
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 4.0e-07 58.9 102 40.2
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 4.0e-07 58.9 103 43.7
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 5.3e-07 58.5 103 40.8
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 6.9e-07 58.2 105 39.0
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 6.9e-07 58.2 103 43.7
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 9.0e-07 57.8 103 42.7
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 9.0e-07 57.8 104 44.2
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 9.0e-07 57.8 101 40.6
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 1.2e-06 57.4 103 42.7
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 1.2e-06 57.4 101 41.6
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.2e-06 57.4 104 38.5
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 2.0e-06 56.6 105 38.1
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.0e-06 56.6 106 41.5
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 2.6e-06 56.2 103 40.8
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 2.6e-06 56.2 101 41.6
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 3.4e-06 55.8 99 42.4
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 3.4e-06 55.8 105 39.0
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 4.5e-06 55.5 103 38.8
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 4.5e-06 55.5 101 39.6
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 4.5e-06 55.5 105 39.0
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 5.8e-06 55.1 103 40.8
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 7.6e-06 54.7 103 38.8
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 7.6e-06 54.7 112 40.2
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 7.6e-06 54.7 103 38.8
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 7.6e-06 54.7 107 43.0
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 9.9e-06 54.3 105 37.1


User provided reference genes

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