Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold38G14952 Striga asiatica HOM05D032558 ORTHO05D015423 8.2e-64 246.9 125 100.0
SGA_v2.0_scaffold51G18653 Striga asiatica HOM05D032558 ORTHO05D000639 3.7e-24 115.2 70 82.9
SGA_v2.0_scaffold48G17941 Striga asiatica HOM05D032558 ORTHO05D000639 1.0e-21 107.1 85 71.8
SalBow7G1645 Salvia bowleyana HOM05D000084 ORTHO05D000639 6.2e-11 71.2 52 71.2
SGA_v2.0_scaffold26G11250 Striga asiatica HOM05D000084 ORTHO05D000639 8.1e-11 70.9 52 71.2
SGA_v2.0_scaffold161G37863 Striga asiatica HOM05D000084 ORTHO05D000639 1.4e-10 70.1 52 69.2
MSTRG.24901 Avicennia marina HOM05D000084 ORTHO05D000639 1.8e-10 69.7 52 69.2
Oeu032528.1 Olea europaea HOM05D000084 ORTHO05D000639 1.8e-10 69.7 52 69.2
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 3.1e-10 68.9 52 67.3
Migut.C00348 Erythranthe guttata HOM05D000084 ORTHO05D000639 4.0e-10 68.6 52 67.3
Sopen04g036480 Solanum pennellii HOM05D000084 ORTHO05D000639 8.9e-10 67.4 50 68.0
PGSC0003DMG400010003 Solanum tuberosum HOM05D000084 ORTHO05D000639 8.9e-10 67.4 50 68.0
CAN.G1330.20 Capsicum annuum HOM05D000084 ORTHO05D000639 1.2e-09 67.0 54 66.7
Solyc04g082840.4 Solanum lycopersicum HOM05D000084 ORTHO05D000639 1.2e-09 67.0 50 66.0
CANSAT25G2227 Cannabis sativa HOM05D000084 ORTHO05D000639 1.5e-09 66.6 48 70.8
Oeu030366.1 Olea europaea HOM05D000084 ORTHO05D000639 1.5e-09 66.6 49 69.4
HanXRQChr07g0204231 Helianthus annuus HOM05D000084 ORTHO05D000639 2.0e-09 66.2 48 68.8
HanXRQChr08g0216781 Helianthus annuus HOM05D000084 ORTHO05D000639 2.0e-09 66.2 48 68.8
ClCG11G019050 Citrullus lanatus HOM05D000084 ORTHO05D000639 2.6e-09 65.9 48 70.8
MELO3C017059.2 Cucumis melo HOM05D000084 ORTHO05D000639 2.6e-09 65.9 48 70.8
CsaV3_4G037650 Cucumis sativus L. HOM05D000084 ORTHO05D000639 2.6e-09 65.9 48 70.8
Hma1.2p1_0489F.1_g164170 Hydrangea macrophylla HOM05D000084 ORTHO05D000639 3.4e-09 65.5 47 70.2
Nitab4.5_0000464g0050 Nicotiana tabacum HOM05D000084 ORTHO05D000639 3.4e-09 65.5 49 67.3
Nitab4.5_0008114g0020 Nicotiana tabacum HOM05D000084 ORTHO05D000639 3.4e-09 65.5 49 67.3
Hund05068 Selenicereus undatus HOM05D000084 ORTHO05D000639 3.4e-09 65.5 49 67.3
Actinidia17085 Actinidia chinensis HOM05D000084 ORTHO05D000639 4.4e-09 65.1 47 70.2
Ah.11g051150 Amaranthus hybridus HOM05D000084 ORTHO05D000639 4.4e-09 65.1 51 66.7
Dinv05505 Davidia involucrata HOM05D000084 ORTHO05D000639 4.4e-09 65.1 47 70.2
Dinv23335 Davidia involucrata HOM05D000084 ORTHO05D000639 4.4e-09 65.1 47 70.2
MD00G1064000 Malus domestica HOM05D000084 ORTHO05D000639 4.4e-09 65.1 49 69.4
MD06G1002500 Malus domestica HOM05D000084 ORTHO05D000639 4.4e-09 65.1 49 69.4
PSO541G0099 Papaver somniferum HOM05D000084 ORTHO05D000639 4.4e-09 65.1 47 70.2
PSO675G4169 Papaver somniferum HOM05D000084 ORTHO05D000639 4.4e-09 65.1 47 70.2
CANSAT25G2385 Cannabis sativa HOM05D000084 ORTHO05D000639 5.8e-09 64.7 48 70.8
Eucgr.F01814 Eucalyptus grandis HOM05D000084 ORTHO05D000639 5.8e-09 64.7 46 71.7
Prupe.5G003700 Prunus persica HOM05D000084 ORTHO05D000639 5.8e-09 64.7 48 68.8
PGR083G0146 Punica granatum HOM05D000084 ORTHO05D000639 5.8e-09 64.7 52 63.5
Sed0009546 Sechium edule HOM05D000084 ORTHO05D000639 5.8e-09 64.7 48 68.8
CSS0012344 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000639 9.9e-09 63.9 47 68.1
CANSAT54G1044 Cannabis sativa HOM05D000084 ORTHO05D000639 9.9e-09 63.9 48 66.7
Lsat_1_v5_gn_8_26701 Lactuca sativa HOM05D000084 ORTHO05D000639 9.9e-09 63.9 48 64.6
Nn5g31064 Nelumbo nucifera HOM05D000084 ORTHO05D000639 9.9e-09 63.9 47 68.1
Rhsim06G0002200 Rhododendron simsii HOM05D000084 ORTHO05D000639 9.9e-09 63.9 47 68.1
TWI56G1020 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 9.9e-09 63.9 52 63.5
TAR376G0415 Trochodendron aralioides HOM05D000084 ORTHO05D000639 9.9e-09 63.9 47 68.1
vmacro21746 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 9.9e-09 63.9 47 68.1
AL2G36670 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
AT1G76540 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
EL10Ac1g01853 Beta vulgaris HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
C06p50800 Brassica napus HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
BolC6t40102H Brassica oleracea HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
BraA07t31749Z Brassica rapa HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
CARHR070090 Cardamine hirsuta HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
DCAR_009858 Daucus carota HOM05D000084 ORTHO05D000639 1.3e-08 63.5 52 63.5
Thhalv10018908m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
Lsat_1_v5_gn_8_26000 Lactuca sativa HOM05D000084 ORTHO05D000639 1.3e-08 63.5 48 62.5
RcHm_v2.0_Chr7g0217191 Rosa chinensis HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
Sp5g31700 Schrenkiella parvula HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
THA.LOC104813283 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 1.3e-08 63.5 46 69.6
ECA233G2797 Erigeron canadensis HOM05D000084 ORTHO05D000639 1.7e-08 63.2 48 62.5
Sp1g18640 Schrenkiella parvula HOM05D000084 ORTHO05D000639 1.7e-08 63.2 46 69.6
Aa31LG7G5120 Aethionema arabicum HOM05D000084 ORTHO05D000639 2.2e-08 62.8 49 67.3
Glyma.17G262300 Glycine max HOM05D000084 ORTHO05D000639 2.2e-08 62.8 50 66.0
Thecc.08G098500 Theobroma cacao HOM05D000084 ORTHO05D000639 2.2e-08 62.8 48 64.6
VMungo0647G1324 Vigna mungo HOM05D000084 ORTHO05D000639 2.2e-08 62.8 51 64.7
AL1G33960 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 69.6
AT1G20930 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 69.6
Carub.0001s2041 Capsella rubella HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 69.6
AUR62035182 Chenopodium quinoa HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
AUR62043316 Chenopodium quinoa HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
COL.COLO4_03303 Corchorus olitorius HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
Haze_22873 Corylus avellana HOM05D000084 ORTHO05D000639 2.9e-08 62.4 49 63.3
Duzib041G0235 Durio zibethinus HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
ECA233G4563 Erigeron canadensis HOM05D000084 ORTHO05D000639 2.9e-08 62.4 48 66.7
Thhalv10008253m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 69.6
Glyma.14G224000 Glycine max HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 69.6
Gohir.A01G101600 Gossypium hirsutum HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
Gohir.D01G086700 Gossypium hirsutum HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
Gorai.002G112300 Gossypium raimondii HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
Manes.18G001200 Manihot esculenta HOM05D000084 ORTHO05D000639 2.9e-08 62.4 48 64.6
Peaxi162Scf00385g00520 Petunia axillaris HOM05D000084 ORTHO05D000639 2.9e-08 62.4 50 64.0
QL02p015981 Quercus lobata HOM05D000084 ORTHO05D000639 2.9e-08 62.4 46 67.4
BcaB03g14291 Brassica carinata HOM05D000084 ORTHO05D000639 3.7e-08 62.0 46 69.6
BcaC06g34849 Brassica carinata HOM05D000084 ORTHO05D000639 3.7e-08 62.0 52 61.5
A07p15380 Brassica napus HOM05D000084 ORTHO05D000639 3.7e-08 62.0 52 61.5
C07p22690 Brassica napus HOM05D000084 ORTHO05D000639 3.7e-08 62.0 52 61.5
BolC7t42801H Brassica oleracea HOM05D000084 ORTHO05D000639 3.7e-08 62.0 46 69.6
BraA07t29277Z Brassica rapa HOM05D000084 ORTHO05D000639 3.7e-08 62.0 52 61.5
CARHR021400 Cardamine hirsuta HOM05D000084 ORTHO05D000639 3.7e-08 62.0 46 69.6
Manes.05G129300 Manihot esculenta HOM05D000084 ORTHO05D000639 3.7e-08 62.0 48 64.6
RcHm_v2.0_Chr6g0250951 Rosa chinensis HOM05D000084 ORTHO05D000639 3.7e-08 62.0 46 69.6
Sc26g0004770 Simmondsia chinensis HOM05D000084 ORTHO05D000639 3.7e-08 62.0 49 63.3
Aa31LG4G6650 Aethionema arabicum HOM05D000084 ORTHO05D000639 4.9e-08 61.6 46 67.4
HanXRQChr07g0204241 Helianthus annuus HOM05D000084 ORTHO05D000639 4.9e-08 61.6 48 62.5
Psat6g124080 Pisum sativum HOM05D000084 ORTHO05D000639 4.9e-08 61.6 50 64.0
TPR.G10069 Trifolium pratense HOM05D000084 ORTHO05D000639 4.9e-08 61.6 50 64.0
arahy.Tifrunner.gnm1.ann1.Q1AFG0 Arachis hypogaea HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 67.4
Carub.0002s2345 Capsella rubella HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 67.4
CiPaw.07G132000 Carya illinoinensis HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 65.2
Duzib093G0878 Durio zibethinus HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 65.2
Glyma.09G071300 Glycine max HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 67.4
Lj5g0022096 Lotus japonicus HOM05D000084 ORTHO05D000639 6.4e-08 61.2 50 64.0
Lalb_Chr03g0033701 Lupinus albus HOM05D000084 ORTHO05D000639 6.4e-08 61.2 51 62.7
Medtr1g075610 Medicago truncatula HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 67.4
Potri.002G003400 Populus trichocarpa HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 65.2
Sabra02G0002200 Salix brachista HOM05D000084 ORTHO05D000639 6.4e-08 61.2 46 65.2
FvH4_5g26360 Fragaria vesca HOM05D000084 ORTHO05D000639 8.3e-08 60.8 46 67.4
FAN04G0258 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.3e-08 60.8 46 67.4
FAN08G0216 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.3e-08 60.8 46 67.4
FAN13G0297 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.3e-08 60.8 46 67.4
FAN18G2300 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.3e-08 60.8 46 67.4
Phvul.001G000500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 8.3e-08 60.8 50 64.0
Glyma.07G070200 Glycine max HOM05D000084 ORTHO05D000639 1.1e-07 60.5 46 67.4
Potri.005G257500 Populus trichocarpa HOM05D000084 ORTHO05D000639 1.1e-07 60.5 46 65.2
Sabra05G0199400 Salix brachista HOM05D000084 ORTHO05D000639 1.1e-07 60.5 46 65.2
Aqoxy5G00955 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 1.4e-07 60.1 44 68.2
BcaC08g47162 Brassica carinata HOM05D000084 ORTHO05D000639 1.4e-07 60.1 44 68.2
BcaC08g47233 Brassica carinata HOM05D000084 ORTHO05D000639 1.4e-07 60.1 44 68.2
Cc05_g04100 Coffea canephora HOM05D000084 ORTHO05D000639 1.4e-07 60.1 44 68.2
Lj4A3G59 Lonicera japonica HOM05D000084 ORTHO05D000639 1.4e-07 60.1 44 68.2
Lalb_Chr01g0008261 Lupinus albus HOM05D000084 ORTHO05D000639 1.4e-07 60.1 46 65.2
Lalb_Chr01g0008271 Lupinus albus HOM05D000084 ORTHO05D000639 1.4e-07 60.1 46 65.2
Atru.chr13.38 Acer truncatum HOM05D000084 ORTHO05D000639 1.9e-07 59.7 45 66.7
BcaC01g03470 Brassica carinata HOM05D000084 ORTHO05D000639 2.4e-07 59.3 46 67.4
C03p52140 Brassica napus HOM05D000084 ORTHO05D000639 2.4e-07 59.3 46 67.4
BolC3t17493H Brassica oleracea HOM05D000084 ORTHO05D000639 2.4e-07 59.3 46 67.4
Sc17g0003340 Simmondsia chinensis HOM05D000084 ORTHO05D000639 2.4e-07 59.3 50 60.0
Ciclev10002132m.g Citrus clementina HOM05D000084 ORTHO05D000639 3.2e-07 58.9 44 65.9
DCAR_017620 Daucus carota HOM05D000084 ORTHO05D000639 3.2e-07 58.9 52 59.6
Sc06g0008840 Simmondsia chinensis HOM05D000084 ORTHO05D000639 3.2e-07 58.9 44 65.9
TWI36G1611 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 3.2e-07 58.9 52 59.6
GSVIVG01013440001 Vitis vinifera HOM05D000084 ORTHO05D000639 3.2e-07 58.9 44 65.9
C03p52570 Brassica napus HOM05D000084 ORTHO05D000639 5.4e-07 58.2 42 71.4
MBI11_g24617_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 5.4e-07 58.2 44 63.6
BolC8t51273H Brassica oleracea HOM05D000084 ORTHO05D000639 7.1e-07 57.8 46 65.2
Cfa014148 Carpinus fangiana HOM05D000084 ORTHO05D000639 7.1e-07 57.8 44 63.6
CiPaw.08G077700 Carya illinoinensis HOM05D000084 ORTHO05D000639 9.2e-07 57.4 46 60.9
MBI01_g22965_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 1.6e-06 56.6 44 63.6
Cpa.g.c24967.3 Carica papaya HOM05D000084 ORTHO05D000639 3.5e-06 55.5 44 61.4
C08p34880 Brassica napus HOM05D000084 ORTHO05D000639 4.6e-06 55.1 46 63.0
ATR1046G001 Amborella trichopoda HOM05D000084 ORTHO05D000639 6.0e-06 54.7 44 56.8
CDE05G0736 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 6.0e-06 54.7 44 61.4
CDE05G2751 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 6.0e-06 54.7 44 61.4
GSVIVG01035910001 Vitis vinifera HOM05D013109 ORTHO05D015423 6.0e-06 54.7 75 49.3


User provided reference genes

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