Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 2.0e-172 609.0 302 100.0
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 2.2e-99 366.3 303 67.3
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.7e-94 349.0 315 60.0
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 6.8e-88 328.2 317 57.7
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.5e-87 327.0 331 57.7
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 8.3e-86 321.2 295 60.7
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 7.3e-66 255.0 313 49.2
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.0e-59 233.0 319 45.5
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.2e-57 227.6 319 45.5
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 2.1e-57 226.9 333 44.4
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 8.1e-57 224.9 319 44.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.1e-56 224.6 319 44.5
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 8.4e-54 214.9 313 44.4
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 7.3e-50 201.8 310 44.2
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.4e-48 197.6 311 41.8
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.8e-48 195.3 301 43.2
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.8e-46 189.5 323 39.3
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.8e-46 189.5 323 39.0
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.4e-46 188.7 317 41.3
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.4e-45 187.6 317 41.3
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.9e-45 187.2 303 41.9
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.1e-44 183.7 310 40.3
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.5e-44 183.0 323 38.4
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.5e-44 183.0 324 38.0
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.3e-43 180.3 331 38.1
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 5.1e-43 179.1 324 36.1
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.6e-43 178.7 319 37.6
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.9e-42 177.2 318 37.4
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.3e-42 175.3 326 35.9
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.6e-42 174.9 326 35.9
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.6e-41 174.1 318 39.6
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.6e-41 172.9 319 37.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.8e-40 170.6 301 41.2
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.0e-40 168.3 320 36.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.5e-39 167.5 330 37.0
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.0e-39 167.2 295 40.7
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 5.8e-39 165.6 328 35.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.9e-37 160.6 329 37.1
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.9e-37 160.6 317 36.6
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.4e-37 160.2 308 36.7
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.2e-37 159.8 313 37.7
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 4.2e-37 159.5 330 35.5
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 4.2e-37 159.5 304 36.5
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.3e-37 158.3 311 37.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.7e-36 156.8 316 36.1
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.5e-36 156.4 326 36.5
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 6.0e-36 155.6 235 43.4
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.0e-35 154.8 326 36.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.0e-35 154.8 302 37.4
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.3e-35 154.5 260 42.3
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.0e-35 153.3 347 35.2
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.0e-35 153.3 326 36.2
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.0e-35 153.3 321 36.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 5.1e-35 152.5 324 33.6
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.6e-35 152.1 327 35.8
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 6.6e-35 152.1 322 34.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 8.7e-35 151.8 327 33.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.5e-34 151.0 338 34.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.5e-34 150.2 317 34.7
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 7.4e-34 148.7 310 33.5
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 9.6e-34 148.3 332 34.6
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 6.2e-33 145.6 329 35.3
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.5e-31 141.0 323 33.7
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 2.0e-31 140.6 320 34.4
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.4e-31 139.8 317 33.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 4.5e-31 139.4 319 34.8
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.7e-30 137.5 322 34.2
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.9e-30 136.7 329 33.4
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 4.9e-30 136.0 330 32.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 6.4e-30 135.6 316 34.2
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 8.4e-30 135.2 329 33.4
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.4e-29 134.4 315 33.7
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.2e-28 131.3 327 33.0
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.6e-28 131.0 305 35.1
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.6e-28 131.0 326 32.2
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.1e-28 130.6 319 30.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.5e-28 129.8 311 33.8
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 3.0e-27 126.7 257 37.7
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 3.9e-27 126.3 315 33.7
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 3.9e-27 126.3 329 31.6
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.9e-27 126.3 314 34.4
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 6.7e-27 125.6 335 31.3
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.3e-26 123.2 317 33.4
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.3e-26 122.9 280 32.5
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 4.3e-26 122.9 304 31.2
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 7.4e-26 122.1 321 30.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 7.4e-26 122.1 321 30.8
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 7.4e-26 122.1 318 31.1
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.3e-25 121.3 301 35.2
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-25 120.9 328 30.8
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 3.7e-25 119.8 321 31.2
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 3.7e-25 119.8 321 31.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 8.1e-25 118.6 308 31.8
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.1e-24 118.2 323 31.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.0e-24 116.3 327 29.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 5.3e-24 115.9 324 31.8
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.2e-23 114.8 323 31.0
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-23 114.4 330 30.6
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.5e-23 114.4 182 41.2
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 2.0e-23 114.0 328 31.7
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.5e-23 112.8 315 28.9
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.8e-23 112.5 323 30.0
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 5.8e-23 112.5 308 31.5
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.6e-23 112.1 315 28.6
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.0e-22 111.7 317 30.3
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.0e-22 111.7 324 30.6
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.0e-22 111.7 303 29.7
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.7e-22 110.9 326 29.4
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 3.8e-22 109.8 328 30.5
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 4.9e-22 109.4 326 29.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.9e-22 109.4 322 32.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.4e-21 107.8 326 30.4
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.9e-21 107.5 319 31.7
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 5.5e-21 105.9 298 28.5
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 9.3e-21 105.1 334 29.0
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 2.1e-20 104.0 218 35.3
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 6.0e-20 102.4 313 30.7
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.0e-19 100.1 303 31.4
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 6.7e-19 99.0 272 32.7
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.6e-17 94.4 307 31.6
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.8e-16 90.9 301 30.2
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.1e-16 90.1 250 30.8
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.3e-16 89.4 318 28.3
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 5.3e-16 89.4 301 30.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 9.0e-16 88.6 186 33.9
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.2e-15 88.2 306 30.1
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.5e-15 86.3 306 28.4
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 5.9e-15 85.9 153 35.3
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.0e-14 85.1 315 27.6
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.0e-14 85.1 318 28.6
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.2e-14 84.0 309 28.2
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.9e-14 83.6 309 28.2
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.9e-14 83.6 309 28.2
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.9e-14 83.6 258 29.8
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.9e-14 83.6 312 28.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 3.8e-14 83.2 302 27.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 9.3e-13 78.6 286 26.2
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.1e-12 77.4 143 37.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 2.7e-12 77.0 265 28.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 6.1e-12 75.9 292 28.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.8e-11 74.3 190 31.6
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 3.0e-11 73.6 275 32.0
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.0e-11 73.6 264 28.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 2.5e-10 70.5 305 28.5
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.3e-09 68.2 295 25.8
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 8.2e-09 65.5 169 34.9
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.4e-08 63.9 180 30.0
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 5.9e-07 59.3 232 31.9


User provided reference genes

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