Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.3e-88 329.7 171 100.0
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 3.3e-31 139.0 190 49.5
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 7.1e-26 121.3 194 47.4
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 5.1e-24 115.2 170 49.4
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.9e-23 113.2 201 41.8
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.9e-23 113.2 175 44.0
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 4.3e-23 112.1 191 45.0
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 7.4e-23 111.3 175 44.0
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.8e-20 101.7 177 40.7
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.2e-18 95.5 189 41.3
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 7.1e-18 94.7 180 41.1
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 7.1e-18 94.7 183 41.0
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.2e-17 94.0 205 38.5
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.6e-17 93.6 175 39.4
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.1e-17 93.2 189 40.2
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.7e-17 92.8 176 40.3
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.7e-17 92.8 160 41.2
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.7e-17 92.8 175 46.9
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 2.7e-17 92.8 209 37.3
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 4.6e-17 92.0 188 40.4
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.0e-16 90.9 193 39.9
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.3e-16 90.5 200 39.0
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.3e-16 90.5 179 40.8
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.3e-16 89.7 165 41.8
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.0e-16 89.4 189 40.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 5.1e-16 88.6 191 40.3
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 5.1e-16 88.6 191 40.3
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.1e-16 88.6 189 36.0
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 6.7e-16 88.2 177 41.2
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 6.7e-16 88.2 184 38.0
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 8.7e-16 87.8 184 39.1
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 8.7e-16 87.8 171 38.6
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.7e-16 87.8 183 39.3
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 8.7e-16 87.8 181 41.4
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-15 87.4 191 39.8
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-15 87.4 191 39.8
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-15 87.0 186 41.9
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.5e-15 87.0 188 38.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.5e-15 87.0 193 39.4
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.5e-15 87.0 210 37.1
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 3.3e-15 85.9 197 37.6
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 4.3e-15 85.5 190 42.6
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 4.3e-15 85.5 186 41.9
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-15 85.5 188 42.6
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 4.3e-15 85.5 186 41.9
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 4.3e-15 85.5 188 42.6
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 5.7e-15 85.1 182 38.5
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 5.7e-15 85.1 186 41.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 5.7e-15 85.1 186 41.9
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 5.7e-15 85.1 183 38.3
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.7e-15 85.1 195 38.5
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.6e-15 84.3 187 41.2
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 9.6e-15 84.3 187 41.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.6e-15 84.3 187 35.3
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 9.6e-15 84.3 187 35.3
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.3e-14 84.0 188 41.0
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.3e-14 84.0 198 38.9
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.3e-14 84.0 199 37.2
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.3e-14 84.0 152 42.8
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.3e-14 84.0 160 41.2
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.3e-14 84.0 173 38.7
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.6e-14 83.6 177 35.0
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.6e-14 83.6 182 37.9
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.1e-14 83.2 171 39.2
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-14 82.8 192 41.7
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.8e-14 82.8 179 41.3
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.8e-14 82.8 179 41.3
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.8e-14 82.8 167 40.1
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.7e-14 82.4 123 45.5
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.7e-14 82.4 188 37.2
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.7e-14 82.4 171 38.0
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.7e-14 82.4 188 36.7
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 4.8e-14 82.0 185 37.8
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 8.2e-14 81.3 194 37.1
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 8.2e-14 81.3 186 37.1
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 8.2e-14 81.3 193 36.3
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.2e-14 81.3 194 39.7
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-13 80.9 183 40.4
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-13 80.9 183 40.4
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-13 80.9 183 40.4
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.1e-13 80.9 195 37.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.4e-13 80.5 193 36.8
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.4e-13 80.5 186 36.0
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.4e-13 80.5 164 39.6
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.8e-13 80.1 191 38.7
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.8e-13 80.1 204 35.8
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 2.4e-13 79.7 136 41.9
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-13 79.0 183 38.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 4.1e-13 79.0 193 37.3
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 5.3e-13 78.6 195 36.4
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 6.9e-13 78.2 188 37.2
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 9.0e-13 77.8 189 35.4
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 9.0e-13 77.8 199 36.2
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 9.0e-13 77.8 151 41.7
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-12 77.4 149 43.6
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 1.2e-12 77.4 149 43.6
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.2e-12 77.4 185 35.7
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 1.2e-12 77.4 159 41.5
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.5e-12 77.0 141 39.7
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-12 77.0 149 43.6
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.5e-12 77.0 149 43.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 2.0e-12 76.6 180 39.4
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 3.4e-12 75.9 189 34.9
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 4.5e-12 75.5 172 36.6
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 4.5e-12 75.5 192 34.9
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 5.8e-12 75.1 80 55.0
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.0e-11 74.3 85 52.9
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.0e-11 74.3 182 35.7
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.0e-11 74.3 177 35.6
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.3e-11 73.9 138 40.6
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.7e-11 73.6 152 40.1
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.2e-11 73.2 141 43.3
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.2e-11 73.2 197 37.6
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.9e-11 72.8 181 37.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 3.8e-11 72.4 134 41.0
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.8e-11 72.4 128 43.0
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 5.0e-11 72.0 175 35.4
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 5.0e-11 72.0 181 38.7
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.5e-11 71.6 172 37.8
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-10 70.9 84 51.2
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.1e-10 70.9 180 35.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.1e-10 70.9 170 38.8
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.9e-10 70.1 75 53.3
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.9e-10 70.1 75 56.0
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.9e-10 70.1 121 42.1
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.5e-10 69.7 183 38.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 3.2e-10 69.3 124 39.5
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.2e-10 68.9 184 31.5
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 9.3e-10 67.8 98 45.9
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 2.1e-09 66.6 166 33.1
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.1e-09 66.6 184 31.0
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 3.5e-09 65.9 158 35.4
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 4.6e-09 65.5 96 42.7
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.3e-08 63.9 168 36.3
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.3e-08 63.9 178 34.3
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.3e-08 63.2 182 37.4
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.3e-08 63.2 81 48.1
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 3.9e-08 62.4 159 34.6
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.1e-07 60.8 170 33.5
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 4.3e-07 58.9 111 38.7
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 3.7e-06 55.8 84 47.6


User provided reference genes

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