Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 2.7e-258 894.8 443 100.0
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.1e-174 615.5 497 64.6
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 5.9e-157 558.1 494 59.7
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.7e-141 506.1 485 54.8
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.5e-139 498.4 481 55.1
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 3.6e-138 495.7 488 52.9
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.0e-137 494.2 491 52.1
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.8e-137 493.4 504 53.0
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.8e-135 486.1 482 53.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 4.1e-134 482.3 511 50.5
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 7.0e-134 481.5 484 52.5
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.9e-132 475.7 485 50.1
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 7.3e-131 471.5 508 50.2
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.2e-130 470.7 487 50.5
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.1e-130 469.9 487 50.3
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.4e-129 467.2 490 50.0
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.3e-129 466.5 496 49.0
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 8.9e-129 464.5 485 50.1
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 8.9e-129 464.5 485 50.1
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 3.7e-127 459.1 496 49.0
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.2e-126 454.5 527 48.4
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.2e-126 454.5 527 48.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 2.7e-125 453.0 490 50.2
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 6.0e-125 451.8 453 53.6
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.7e-124 450.3 528 48.3
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.6e-122 443.7 484 48.3
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.1e-122 443.4 478 49.4
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 4.7e-122 442.2 537 46.0
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 4.7e-122 442.2 536 45.1
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 6.2e-122 441.8 517 46.2
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 8.0e-122 441.4 484 49.8
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 8.0e-122 441.4 542 46.7
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.9e-119 433.0 504 46.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 2.9e-119 433.0 507 45.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 3.7e-119 432.6 509 45.6
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 8.3e-119 431.4 508 45.7
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.4e-118 430.6 519 45.7
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.9e-118 430.3 539 45.3
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 2.4e-118 429.9 528 46.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.2e-117 427.6 515 50.7
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 4.6e-117 425.6 527 45.2
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.3e-116 424.1 488 48.0
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 3.0e-116 422.9 509 47.5
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 6.6e-116 421.8 552 44.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.1e-115 421.0 484 47.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.5e-115 420.6 484 48.1
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 4.3e-115 419.1 487 46.4
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 7.3e-115 418.3 486 47.3
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 2.8e-114 416.4 511 43.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-113 414.5 501 45.9
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 4.0e-113 412.5 486 46.1
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 5.2e-113 412.1 532 44.5
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 8.9e-113 411.4 498 44.8
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 9.9e-112 407.9 483 45.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.7e-111 407.1 504 43.8
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.7e-111 406.0 488 45.7
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.4e-110 404.1 496 44.8
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.9e-110 403.7 491 44.6
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.9e-110 403.7 521 44.7
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.4e-110 403.3 501 43.9
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 3.2e-110 402.9 502 45.4
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 3.2e-110 402.9 482 46.5
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 4.1e-110 402.5 610 40.5
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.6e-109 399.1 481 45.3
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 7.8e-109 398.3 481 45.5
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.3e-108 397.5 488 47.5
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.3e-108 397.5 636 38.4
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.3e-108 396.7 526 44.9
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 8.6e-108 394.8 485 44.1
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.5e-107 394.0 533 43.5
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 2.5e-107 393.3 541 44.2
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 2.5e-107 393.3 541 44.2
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 3.3e-107 392.9 381 52.2
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 7.3e-107 391.7 411 50.4
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.8e-106 389.8 537 42.8
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.7e-106 389.0 614 37.8
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 8.1e-106 388.3 551 44.1
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 3.1e-105 386.3 518 44.6
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.1e-105 386.3 564 41.7
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 4.0e-105 386.0 507 43.2
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.2e-104 384.4 485 44.1
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 2.0e-104 383.6 552 42.8
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.0e-104 383.6 442 44.8
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.3e-103 380.9 528 43.8
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.3e-103 380.9 489 44.0
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 6.4e-103 378.6 553 42.3
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 5.4e-102 375.6 485 43.7
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 7.1e-102 375.2 515 43.1
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.5e-101 372.9 369 51.8
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.6e-101 372.5 473 46.7
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.0e-100 369.8 476 44.1
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.3e-99 366.3 587 38.8
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.6e-98 364.0 519 41.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.2e-98 362.1 500 43.2
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.1e-97 361.3 480 42.1
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.1e-97 359.8 453 44.2
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.6e-96 356.7 535 41.7
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 3.4e-96 356.3 492 42.1
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.7e-95 354.0 480 40.0
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 2.4e-94 350.1 484 42.8
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 3.2e-94 349.7 500 40.8
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.2e-94 349.4 409 45.2
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.8e-90 336.7 477 42.8
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 6.2e-90 335.5 427 43.1
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.4e-89 334.3 414 45.9
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.8e-89 334.0 411 44.3
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.4e-88 329.7 482 39.8
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.4e-86 324.3 489 40.1
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 4.2e-86 322.8 489 40.3
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 5.4e-86 322.4 489 39.9
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 7.1e-86 322.0 461 42.1
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 3.0e-84 316.6 526 40.1
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 6.7e-84 315.5 340 47.4
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.3e-82 311.2 500 38.6
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 5.5e-78 295.8 459 40.7
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.5e-78 295.8 447 39.6
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 5.3e-73 279.3 498 36.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.3e-71 274.6 493 35.7
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.7e-71 274.2 499 35.5
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.2e-69 268.1 483 33.7
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.1e-69 267.3 336 42.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.0e-63 246.1 245 49.4
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.6e-61 240.0 385 39.2
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.7e-58 229.9 487 33.1
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.0e-56 224.2 385 37.4
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 5.0e-55 219.5 457 34.8
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 8.5e-55 218.8 446 33.0
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 8.5e-55 218.8 497 31.6
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 5.5e-54 216.1 414 36.2
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.0e-52 210.3 316 37.3
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 4.4e-51 206.5 314 34.7
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.7e-50 203.4 355 34.9
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 1.2e-48 198.4 208 48.1
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.2e-45 188.3 223 43.9
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 2.7e-45 187.2 417 32.1
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.4e-44 184.9 281 39.1
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.3e-39 168.3 417 29.7
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 6.1e-37 159.5 163 47.2
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.7e-34 150.2 271 39.1
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.8e-34 149.8 288 37.5
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 4.5e-32 143.3 157 45.2
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 2.9e-31 140.6 522 26.2
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.0e-28 130.2 272 35.7
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 4.4e-27 126.7 83 65.1
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 8.3e-26 122.5 281 29.2
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-25 120.9 303 28.4
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 9.1e-25 119.0 103 53.4
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.5e-22 111.7 66 69.7
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 2.3e-20 104.4 173 37.0
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 8.9e-20 102.4 84 57.1
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 3.4e-19 100.5 231 28.1
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.3e-18 98.6 250 30.0
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.7e-18 98.2 124 41.1
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 1.4e-17 95.1 71 63.4
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 1.2e-16 92.0 72 58.3
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 1.0e-15 89.0 86 50.0
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-15 88.2 103 44.7
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 6.6e-15 86.3 117 40.2
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.9e-14 84.7 98 45.9
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.8e-11 73.2 301 23.3
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 8.3e-10 69.3 89 38.2
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 4.1e-09 67.0 120 44.2
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 7.8e-08 62.8 335 23.9
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 1.3e-07 62.0 88 36.4
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 3.0e-07 60.8 41 63.4
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 8.6e-07 59.3 335 22.1
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.1e-06 58.9 335 22.1
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.1e-06 58.9 335 22.1
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 3.3e-06 57.4 172 27.3
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 9.5e-06 55.8 161 29.8
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 9.5e-06 55.8 394 22.1


User provided reference genes

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