Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 2.5e-144 515.4 253 100.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 2.9e-84 315.8 212 69.8
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 5.0e-84 315.1 220 68.6
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.1e-83 313.9 212 69.8
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 5.5e-83 311.6 214 68.7
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 7.2e-83 311.2 215 67.9
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 9.4e-83 310.8 207 71.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 9.4e-83 310.8 212 69.3
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 9.4e-83 310.8 209 70.8
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.2e-82 310.5 212 70.3
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 3.6e-82 308.9 207 71.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 4.6e-82 308.5 207 69.6
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.6e-82 308.5 214 68.2
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.6e-82 308.5 214 71.0
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.6e-82 308.5 207 70.5
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.6e-82 308.5 210 70.5
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 6.1e-82 308.1 216 68.5
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.4e-81 307.0 212 68.9
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.8e-81 306.6 214 68.7
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.8e-81 306.6 213 67.6
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.8e-81 306.6 207 70.5
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.8e-81 306.6 212 68.4
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.8e-81 306.6 212 67.9
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.3e-81 306.2 214 68.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.3e-81 306.2 207 69.6
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.3e-81 306.2 212 67.9
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.0e-81 305.8 212 68.4
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.0e-81 305.8 212 68.9
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.0e-81 305.8 212 68.4
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.9e-81 305.4 207 68.6
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 3.9e-81 305.4 212 69.3
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.9e-81 305.4 213 66.2
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 5.1e-81 305.1 207 70.5
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 5.1e-81 305.1 207 69.6
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 5.1e-81 305.1 214 69.6
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 6.7e-81 304.7 212 67.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 8.8e-81 304.3 207 70.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 8.8e-81 304.3 214 68.2
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.1e-80 303.9 207 70.0
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 1.1e-80 303.9 212 67.9
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.5e-80 303.5 207 70.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.5e-80 303.5 214 68.2
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 2.0e-80 303.1 213 66.7
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 3.3e-80 302.4 206 68.4
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 4.4e-80 302.0 207 68.6
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 4.4e-80 302.0 212 68.9
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 4.4e-80 302.0 207 69.6
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 8.2e-79 297.7 207 69.6
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.1e-78 297.4 212 66.5
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.4e-78 297.0 215 67.4
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.4e-78 296.2 214 66.8
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 3.1e-78 295.8 215 65.1
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 3.1e-78 295.8 205 69.3
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 3.1e-78 295.8 213 63.8
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 4.1e-78 295.4 205 67.8
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 5.3e-78 295.0 209 65.6
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 5.3e-78 295.0 206 68.4
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 5.3e-78 295.0 206 68.4
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 5.3e-78 295.0 234 61.5
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 6.9e-78 294.7 210 67.6
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 6.9e-78 294.7 214 64.0
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 9.1e-78 294.3 205 68.3
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 9.1e-78 294.3 207 67.6
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 9.1e-78 294.3 214 64.0
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.2e-77 293.9 205 67.8
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.2e-77 293.9 206 67.5
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.2e-77 293.9 205 67.8
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.5e-77 293.5 205 67.8
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.5e-77 293.5 206 67.5
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.6e-77 292.7 208 66.8
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 3.4e-77 292.4 205 66.8
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.4e-77 292.4 205 67.3
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 3.4e-77 292.4 214 64.5
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 4.5e-77 292.0 207 67.1
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 5.9e-77 291.6 207 66.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 5.9e-77 291.6 214 61.7
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.0e-76 290.8 205 67.3
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.0e-76 290.8 205 67.8
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.3e-76 290.4 206 67.0
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.3e-76 290.4 207 65.7
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.7e-76 290.0 207 66.2
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.2e-76 289.7 205 66.8
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.5e-75 285.0 213 65.3
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.5e-75 285.0 207 62.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.1e-74 283.1 207 65.2
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.6e-74 282.3 207 66.2
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 7.9e-74 281.2 210 65.2
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 7.9e-74 281.2 212 63.2
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.9e-73 278.9 212 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.5e-72 276.9 206 63.6
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.5e-72 276.9 213 62.4
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.6e-72 276.2 204 66.2
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 7.4e-72 274.6 204 65.7
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.8e-71 271.9 204 65.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 6.3e-71 271.6 206 63.6
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.6e-69 266.9 185 64.3
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 5.9e-69 265.0 207 64.3
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.3e-65 253.1 205 61.5
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.0e-65 252.7 212 59.9
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 4.0e-65 252.3 181 68.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 8.8e-65 251.1 203 60.1
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.9e-61 238.4 168 67.9
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 5.9e-61 238.4 168 66.1
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.9e-59 233.4 160 69.4
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.2e-59 232.6 193 59.6
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 3.6e-58 229.2 253 49.0
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.0e-57 227.6 160 67.5
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 5.7e-56 221.9 159 67.9
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 4.1e-54 215.7 174 60.9
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 7.7e-53 211.5 212 48.6
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.9e-52 209.5 217 52.5
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.8e-50 203.0 208 49.5
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 3.1e-46 189.5 135 65.2
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 7.3e-43 178.3 208 47.1
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 2.8e-42 176.4 152 57.9
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.4e-38 164.1 145 59.3
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.6e-37 160.6 224 39.7
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.6e-37 160.6 224 39.7
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 6.6e-36 155.2 124 59.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 6.6e-36 155.2 124 59.7
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 4.7e-34 149.1 95 73.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.7e-29 133.3 194 39.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.4e-17 93.6 101 47.5
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 2.0e-16 90.5 84 51.2
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.9e-16 88.2 121 46.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 9.9e-16 88.2 64 60.9
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 3.8e-15 86.3 51 74.5
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.1e-13 80.5 57 61.4
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 6.0e-13 79.0 72 54.2
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.3e-12 77.8 73 52.1
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.3e-12 77.8 53 69.8
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 2.4e-09 67.0 38 78.9
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 4.0e-09 66.2 49 63.3
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 5.4e-06 55.8 39 69.2
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 9.3e-06 55.1 36 77.8


User provided reference genes

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