Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 4.7e-109 397.9 204 100.0
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 6.4e-74 281.2 204 77.5
SGA_v2.0_scaffold483G52344 Striga asiatica HOM05D005137 ORTHO05D008098 5.1e-39 165.2 111 77.5
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 6.1e-32 141.7 104 75.0
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 2.6e-27 126.3 100 67.0
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 3.8e-26 122.5 104 65.4
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 5.0e-26 122.1 98 67.3
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 5.0e-26 122.1 98 67.3
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 5.5e-25 118.6 104 64.4
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 5.5e-25 118.6 104 63.5
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 7.2e-25 118.2 98 65.3
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 7.2e-25 118.2 104 63.5
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 7.2e-25 118.2 98 66.3
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 9.4e-25 117.9 101 62.4
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 9.4e-25 117.9 99 63.6
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.2e-24 117.5 104 62.5
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.2e-24 117.5 104 62.5
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.2e-24 117.5 104 62.5
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.2e-24 117.5 98 64.3
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.6e-24 117.1 99 63.6
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 1.6e-24 117.1 98 64.3
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 2.1e-24 116.7 99 62.6
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 2.1e-24 116.7 99 62.6
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 2.1e-24 116.7 99 62.6
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.7e-24 116.3 98 64.3
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.6e-24 115.9 104 60.6
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.6e-24 115.9 98 61.2
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 4.7e-24 115.5 99 61.6
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 4.7e-24 115.5 97 63.9
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 4.7e-24 115.5 104 59.6
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 4.7e-24 115.5 98 63.3
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.7e-24 115.5 99 62.6
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 6.1e-24 115.2 98 64.3
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 6.1e-24 115.2 104 60.6
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 6.1e-24 115.2 104 61.5
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 7.9e-24 114.8 98 63.3
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 7.9e-24 114.8 97 63.9
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.0e-23 114.4 104 59.6
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.0e-23 114.4 98 64.3
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 1.0e-23 114.4 98 61.2
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-23 114.4 95 64.2
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-23 114.4 95 64.2
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 1.0e-23 114.4 95 64.2
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.4e-23 114.0 104 61.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.3e-23 113.2 98 61.2
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 3.0e-23 112.8 97 62.9
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 3.0e-23 112.8 98 62.2
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 3.0e-23 112.8 104 59.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 3.9e-23 112.5 99 59.6
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 3.9e-23 112.5 99 59.6
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 3.9e-23 112.5 98 62.2
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 3.9e-23 112.5 98 62.2
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 5.2e-23 112.1 98 62.2
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 5.2e-23 112.1 98 62.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 5.2e-23 112.1 113 54.0
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.2e-23 112.1 104 59.6
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 6.7e-23 111.7 100 58.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 6.7e-23 111.7 98 61.2
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 6.7e-23 111.7 104 57.7
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 6.7e-23 111.7 97 60.8
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 8.8e-23 111.3 97 62.9
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 8.8e-23 111.3 97 60.8
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 8.8e-23 111.3 98 58.2
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 8.8e-23 111.3 98 59.2
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 8.8e-23 111.3 95 62.1
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.1e-22 110.9 104 58.7
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 1.1e-22 110.9 95 62.1
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 1.1e-22 110.9 98 59.2
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.5e-22 110.5 100 59.0
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.5e-22 110.5 98 60.2
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.5e-22 110.5 97 61.9
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 2.0e-22 110.2 90 64.4
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 2.6e-22 109.8 104 57.7
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.6e-22 109.8 99 56.6
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.3e-22 109.4 96 63.5
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.3e-22 109.4 95 61.1
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 4.4e-22 109.0 99 56.6
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 4.4e-22 109.0 95 62.1
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.4e-22 109.0 98 60.2
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 5.7e-22 108.6 104 59.6
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 7.4e-22 108.2 104 56.7
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 9.7e-22 107.8 98 59.2
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 9.7e-22 107.8 98 59.2
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 9.7e-22 107.8 104 56.7
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 9.7e-22 107.8 104 54.8
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 9.7e-22 107.8 97 58.8
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.3e-21 107.5 98 59.2
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.3e-21 107.5 104 56.7
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.3e-21 107.5 104 54.8
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.7e-21 107.1 98 59.2
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.7e-21 107.1 98 59.2
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 2.2e-21 106.7 99 57.6
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.2e-21 106.7 98 60.2
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 2.8e-21 106.3 90 64.4
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.8e-21 106.3 102 56.9
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.7e-21 105.9 98 57.1
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 4.8e-21 105.5 98 58.2
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 4.8e-21 105.5 98 58.2
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 6.3e-21 105.1 97 58.8
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 6.3e-21 105.1 97 57.7
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 8.2e-21 104.8 98 57.1
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.1e-20 104.4 104 53.8
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.4e-20 104.0 104 54.8
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.4e-20 104.0 95 58.9
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.8e-20 103.6 104 56.7
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.8e-20 103.6 98 57.1
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.8e-20 103.6 98 57.1
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.8e-20 103.6 98 56.1
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.8e-20 103.6 100 54.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.8e-20 103.6 104 52.9
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 2.4e-20 103.2 109 54.1
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 5.3e-20 102.1 95 58.9
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 5.3e-20 102.1 103 55.3
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 5.3e-20 102.1 98 57.1
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.6e-19 100.5 96 55.2
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 7.7e-19 98.2 95 60.0
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.2e-18 96.7 98 53.1
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.2e-18 96.7 98 52.0
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.9e-18 96.3 94 51.1
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-16 89.0 81 59.3
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 6.1e-16 88.6 95 51.6
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 6.1e-16 88.6 95 51.6
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.5e-14 84.0 100 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 9.7e-14 81.3 94 51.1
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.3e-13 80.9 94 45.7
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 2.8e-13 79.7 94 44.7
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.4e-12 77.4 100 46.0
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.0e-11 73.6 72 56.9
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.0e-11 73.6 111 40.5
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.5e-11 72.8 56 71.4
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.3e-10 70.9 50 74.0
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.5e-09 67.4 58 60.3
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 3.2e-09 66.2 59 57.6
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 3.2e-09 66.2 82 47.6
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-08 64.3 60 56.7
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 8.0e-08 61.6 52 63.5
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 5.7e-06 55.5 32 78.1


User provided reference genes

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