Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 9.1e-75 283.5 144 100.0
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 3.8e-73 278.1 144 97.9
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 3.8e-73 278.1 144 97.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 6.6e-33 144.4 75 94.7
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-31 139.4 75 89.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.1e-27 127.1 75 78.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 9.2e-27 124.0 71 80.3
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.5e-26 122.1 72 81.9
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.8e-26 120.9 75 74.7
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.0e-25 120.6 70 80.0
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.3e-25 120.2 68 79.4
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.7e-25 119.8 65 86.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.7e-25 119.8 72 75.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.9e-25 118.6 70 78.6
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 5.1e-25 118.2 72 76.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 5.1e-25 118.2 71 74.6
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 5.1e-25 118.2 72 77.8
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 8.7e-25 117.5 68 79.4
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-25 117.5 68 79.4
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-25 117.5 68 79.4
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.7e-25 117.5 72 77.8
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.1e-24 117.1 73 75.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.1e-24 117.1 68 80.9
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.1e-24 117.1 72 77.8
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-24 117.1 77 72.7
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.1e-24 117.1 68 77.9
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.5e-24 116.7 72 72.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.9e-24 116.3 64 81.2
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.5e-24 115.9 65 80.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.5e-24 115.9 85 63.5
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.5e-24 115.9 72 76.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.3e-24 115.5 68 77.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.3e-24 115.5 68 76.5
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 3.3e-24 115.5 67 79.1
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.3e-24 115.2 65 81.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.6e-24 114.8 72 76.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 5.6e-24 114.8 75 74.7
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 7.3e-24 114.4 73 74.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 7.3e-24 114.4 65 78.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 9.6e-24 114.0 65 84.6
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 9.6e-24 114.0 68 77.9
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 9.6e-24 114.0 67 74.6
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.2e-23 113.6 72 72.2
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.2e-23 113.6 73 74.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.2e-23 113.6 72 72.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.2e-23 113.6 72 72.2
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.6e-23 113.2 65 78.5
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.6e-23 113.2 71 70.4
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.6e-23 113.2 71 70.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.8e-23 112.5 68 75.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.8e-23 112.5 73 72.6
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.8e-23 112.5 73 72.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 3.6e-23 112.1 81 66.7
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.7e-23 111.7 70 72.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 6.2e-23 111.3 65 81.5
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 8.1e-23 110.9 65 76.9
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 8.1e-23 110.9 65 76.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 8.1e-23 110.9 68 73.5
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 8.1e-23 110.9 70 74.3
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.1e-22 110.5 73 71.2
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.1e-22 110.5 67 74.6
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.1e-22 110.5 65 72.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.4e-22 110.2 73 71.2
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.4e-22 110.2 73 68.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.4e-22 110.2 67 73.1
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.8e-22 109.8 66 75.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.8e-22 109.8 65 75.4
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.8e-22 109.8 68 70.6
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.4e-22 109.4 77 67.5
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.4e-22 109.4 68 70.6
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.4e-22 109.4 68 70.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.4e-22 109.4 68 70.6
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.4e-22 109.4 67 73.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.1e-22 109.0 66 74.2
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.0e-22 108.6 66 74.2
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 4.0e-22 108.6 73 69.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 4.0e-22 108.6 68 73.5
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 5.2e-22 108.2 79 63.3
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 5.2e-22 108.2 67 71.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 6.9e-22 107.8 67 70.1
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 6.9e-22 107.8 67 70.1
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 9.0e-22 107.5 73 69.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 9.0e-22 107.5 73 69.9
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 9.0e-22 107.5 65 75.4
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.2e-21 107.1 67 73.1
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.2e-21 107.1 71 67.6
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.5e-21 106.7 72 69.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.5e-21 106.7 67 71.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.0e-21 106.3 73 67.1
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.0e-21 106.3 68 70.6
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-21 106.3 68 70.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-21 106.3 68 70.6
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.0e-21 106.3 73 72.6
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 2.0e-21 106.3 68 70.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 4.4e-21 105.1 67 71.6
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 7.6e-21 104.4 65 67.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.6e-21 104.4 68 69.1
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.7e-20 103.2 65 72.3
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.2e-20 102.8 72 62.5
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.9e-20 102.4 65 67.7
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.8e-20 102.1 68 69.1
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.4e-19 100.1 68 67.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-19 99.8 68 67.6
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.9e-19 99.8 65 66.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 3.2e-19 99.0 67 62.7
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.4e-19 98.2 65 66.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 9.3e-19 97.4 67 64.2
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.5e-18 95.5 77 59.7
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 3.5e-18 95.5 70 58.6
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 4.6e-18 95.1 65 64.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.0e-18 94.7 68 61.8
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 6.0e-18 94.7 70 62.9
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 7.8e-18 94.4 121 45.5
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 8.7e-17 90.9 53 81.1
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.5e-16 89.4 65 63.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 5.6e-16 88.2 71 59.2
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.3e-15 87.0 55 70.9
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.3e-15 87.0 69 55.1
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.6e-15 86.7 50 78.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.6e-15 85.5 47 83.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 8.1e-15 84.3 64 59.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.1e-14 84.0 65 58.5
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 3.1e-14 82.4 60 66.7
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.0e-14 82.0 60 60.0
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 6.9e-14 81.3 54 68.5
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 6.9e-14 81.3 48 79.2
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.9e-14 81.3 57 68.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.5e-13 80.1 48 72.9
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.4e-13 79.0 59 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.3e-12 77.0 72 48.6
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.3e-12 77.0 48 72.9
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.9e-12 75.9 80 47.5
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 4.9e-12 75.1 65 52.3
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.1e-11 73.9 52 63.5
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-10 70.5 65 50.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.0e-10 68.2 48 62.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.8e-09 66.6 65 43.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.3e-09 66.2 66 40.9
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.7e-09 64.7 62 46.8
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 8.7e-09 64.3 40 67.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-08 63.5 48 58.3
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.5e-08 62.8 68 42.6
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.5e-08 62.8 70 41.4
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.6e-08 61.6 68 41.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.4e-08 61.2 75 46.7


User provided reference genes

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