Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 9.4e-68 260.0 126 100.0
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 3.9e-45 184.9 117 74.4
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 5.6e-36 154.5 117 64.1
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 6.8e-34 147.5 120 60.0
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 1.5e-33 146.4 117 59.8
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 2.6e-33 145.6 120 57.5
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 1.9e-31 139.4 119 58.0
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 5.4e-31 137.9 120 58.3
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 2.1e-30 136.0 119 59.7
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 4.6e-30 134.8 120 55.0
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 4.6e-30 134.8 120 55.0
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 3.0e-29 132.1 120 54.2
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 3.0e-29 132.1 120 54.2
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 3.9e-29 131.7 120 53.3
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 6.6e-29 131.0 120 55.0
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.1e-28 130.2 135 47.4
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.1e-28 130.2 118 54.2
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 1.9e-28 129.4 120 55.8
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 1.9e-28 129.4 118 51.7
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 2.5e-28 129.0 124 53.2
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 2.5e-28 129.0 124 50.8
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 9.6e-28 127.1 122 54.1
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 2.8e-27 125.6 117 52.1
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 6.2e-27 124.4 117 53.0
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 6.2e-27 124.4 116 54.3
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 8.1e-27 124.0 116 50.9
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 1.8e-26 122.9 121 52.1
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 1.8e-26 122.9 118 51.7
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.1e-26 122.1 118 51.7
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 5.2e-26 121.3 128 48.4
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 8.9e-26 120.6 118 50.8
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 1.2e-25 120.2 125 46.4
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 2.6e-25 119.0 127 48.0
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 5.8e-25 117.9 127 46.5
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 7.6e-25 117.5 117 49.6
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 2.2e-24 115.9 116 47.4
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 3.8e-24 115.2 119 48.7
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 4.9e-24 114.8 126 45.2
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 2.4e-23 112.5 113 47.8
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 3.2e-23 112.1 129 45.7
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 3.3e-20 102.1 126 42.1
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 4.8e-19 98.2 120 43.3
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 6.2e-19 97.8 119 43.7
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 9.0e-18 94.0 102 43.1
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 3.4e-17 92.0 120 40.8
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 1.7e-16 89.7 116 42.2
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 6.0e-14 81.3 117 37.6
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 2.3e-13 79.3 117 41.9
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 1.1e-12 77.0 44 77.3
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 2.5e-12 75.9 113 40.7
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 3.3e-12 75.5 58 58.6
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 5.6e-12 74.7 112 39.3
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 7.4e-12 74.3 84 48.8
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 4.8e-11 71.6 118 38.1
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 4.8e-11 71.6 105 35.2
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 6.2e-11 71.2 118 39.0
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 8.1e-11 70.9 109 39.4
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 1.4e-10 70.1 110 41.8
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 3.1e-10 68.9 46 69.6
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 6.9e-10 67.8 114 37.7
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 1.5e-09 66.6 114 38.6
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 3.4e-09 65.5 110 40.0
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 2.2e-08 62.8 113 38.1
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 2.9e-08 62.4 84 36.9
Os06g0128800 Oryza sativa ssp. japonica HOM05D041313 ORTHO05D010232 8.4e-08 60.8 122 31.1
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 1.1e-07 60.5 110 37.3
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 1.4e-07 60.1 114 36.0
MBI12_g33658_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 1.9e-07 59.7 83 41.0
MBI12_g47231_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 1.9e-07 59.7 83 41.0
Prupe.2G157400 Prunus persica HOM05D002113 ORTHO05D002124 5.5e-07 58.2 102 35.3
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 7.1e-07 57.8 61 44.3
MBI12_g33479_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 7.1e-07 57.8 83 38.6
MBI12_g42336_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 7.1e-07 57.8 83 38.6
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 7.1e-07 57.8 102 35.3
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 1.2e-06 57.0 102 34.3
PSO478G4233 Papaver somniferum HOM05D002113 ORTHO05D002124 1.6e-06 56.6 87 36.8
BcaB01g02257 Brassica carinata HOM05D002113 ORTHO05D002124 2.1e-06 56.2 101 34.7
MD07G1126500 Malus domestica HOM05D002113 ORTHO05D002124 2.7e-06 55.8 103 30.1
MD01G1049600 Malus domestica HOM05D002113 ORTHO05D002124 3.5e-06 55.5 102 32.4
BcaC07g40624 Brassica carinata HOM05D002113 ORTHO05D002124 4.6e-06 55.1 90 32.2
A09p53270 Brassica napus HOM05D002113 ORTHO05D002124 4.6e-06 55.1 90 32.2
C08p36070 Brassica napus HOM05D002113 ORTHO05D002124 4.6e-06 55.1 90 32.2
BolC8t51187H Brassica oleracea HOM05D002113 ORTHO05D002124 4.6e-06 55.1 90 32.2
BraA09t40751Z Brassica rapa HOM05D002113 ORTHO05D002124 4.6e-06 55.1 90 32.2
MD07G1126400 Malus domestica HOM05D002113 ORTHO05D002124 6.0e-06 54.7 99 36.4
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 7.9e-06 54.3 39 59.0
Thhalv10006244m.g Eutrema salsugineum HOM05D002113 ORTHO05D002124 7.9e-06 54.3 96 31.2


User provided reference genes

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