Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 1.6e-197 692.6 344 100.0
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 2.3e-140 502.7 343 72.0
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 2.9e-135 485.7 329 72.3
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 6.7e-132 474.6 329 71.4
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 2.1e-125 453.0 339 64.6
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 3.0e-124 449.1 328 66.5
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 3.3e-123 445.7 346 62.1
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 4.8e-122 441.8 339 64.6
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 3.1e-121 439.1 331 65.3
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 2.0e-120 436.4 341 63.9
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 3.4e-120 435.6 327 63.6
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 7.6e-120 434.5 340 63.2
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 2.2e-119 433.0 339 61.7
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 6.5e-119 431.4 328 65.5
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 7.2e-118 427.9 330 63.0
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 3.5e-117 425.6 339 64.0
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.0e-116 424.1 327 63.6
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 1.8e-116 423.3 327 62.4
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 3.0e-116 422.5 326 62.0
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 8.7e-116 421.0 327 63.3
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 1.1e-115 420.6 330 62.4
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.5e-115 420.2 334 62.0
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.5e-115 420.2 329 63.2
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.5e-115 420.2 328 62.5
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.5e-115 419.5 328 62.5
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 4.3e-115 418.7 307 68.1
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 4.3e-115 418.7 332 62.3
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 7.4e-115 417.9 328 62.8
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 4.8e-114 415.2 327 62.1
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 4.8e-114 415.2 330 61.2
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.1e-113 414.1 345 61.2
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.1e-113 414.1 329 61.7
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 3.1e-113 412.5 330 61.5
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 6.9e-113 411.4 332 61.4
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.2e-112 410.6 326 61.7
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.2e-112 410.6 328 60.4
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 7.7e-112 407.9 328 62.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 7.7e-112 407.9 331 61.3
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.0e-111 407.5 328 59.5
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.0e-111 407.5 329 60.5
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.9e-111 406.0 345 59.7
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 5.0e-111 405.2 330 59.7
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.1e-110 404.1 327 60.6
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 1.1e-110 404.1 328 61.0
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.9e-110 403.3 328 59.8
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.9e-110 403.3 325 60.3
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 2.5e-110 402.9 330 59.7
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 3.2e-110 402.5 331 61.0
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 1.2e-109 400.6 328 61.9
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 3.6e-109 399.1 325 59.4
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 7.9e-109 397.9 335 59.4
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 3.9e-108 395.6 330 61.5
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 2.0e-107 393.3 326 58.3
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 7.4e-107 391.3 329 59.6
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 7.4e-107 391.3 323 61.9
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 9.7e-107 391.0 325 59.7
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.3e-106 390.6 325 57.5
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 2.8e-106 389.4 328 59.8
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 4.8e-106 388.7 324 58.0
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 1.4e-105 387.1 325 57.8
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.4e-105 387.1 328 56.7
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 1.4e-105 387.1 347 55.6
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 2.4e-105 386.3 326 58.3
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 2.4e-105 386.3 330 60.3
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 2.4e-105 386.3 332 59.3
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.2e-104 384.0 326 59.5
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 2.6e-104 382.9 330 57.9
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 2.6e-104 382.9 332 58.7
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.5e-104 382.1 310 59.7
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 5.9e-104 381.7 324 56.8
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 5.9e-104 381.7 352 54.5
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.3e-103 380.6 350 55.7
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 6.1e-101 371.7 327 54.4
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.4e-100 370.5 327 58.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 8.8e-100 367.9 352 56.0
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.1e-99 367.5 319 61.8
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 5.7e-99 365.2 337 53.4
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 6.3e-98 361.7 333 53.2
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 4.5e-96 355.5 334 55.7
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 8.5e-95 351.3 352 51.4
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 5.5e-94 348.6 312 60.3
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 6.1e-93 345.1 390 49.2
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 8.8e-92 341.3 339 51.0
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 1.1e-89 334.3 338 49.1
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.3e-82 310.8 337 47.8
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 4.5e-80 302.4 327 48.3
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 6.5e-79 298.5 331 48.3
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 8.8e-76 288.1 199 71.4
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 1.2e-75 287.7 211 68.7
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 3.4e-75 286.2 200 70.0
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 5.7e-75 285.4 305 50.8
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 8.3e-74 281.6 199 70.9
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.8e-73 280.4 199 69.8
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.3e-71 273.5 199 68.3
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 6.6e-71 271.9 199 66.8
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 8.6e-71 271.6 199 67.8
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.6e-69 267.3 325 43.4
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 5.2e-68 262.3 326 44.2
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 2.9e-66 256.5 209 61.7
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 3.5e-64 249.6 185 67.0
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 7.8e-64 248.4 327 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 3.9e-63 246.1 247 48.6
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 6.8e-60 235.3 199 59.3
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 4.9e-58 229.2 304 41.8
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 1.3e-50 204.5 260 42.7
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.0e-47 193.4 248 41.9
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 9.6e-38 161.8 130 56.2
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 6.2e-37 159.1 102 74.5
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 8.9e-36 155.2 324 32.7
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 2.0e-35 154.1 127 56.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.7e-34 151.0 127 52.8
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 4.9e-34 149.4 324 29.6
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 4.9e-34 149.4 327 33.6
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.4e-33 147.9 127 55.9
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 4.6e-32 142.9 130 53.8
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 1.7e-23 114.4 98 53.1
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 3.3e-22 110.2 106 49.1
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 2.6e-19 100.5 59 83.1
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.4e-17 94.7 102 46.1
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.3e-15 87.4 89 49.4
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.5e-14 84.0 100 47.0
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 7.4e-14 82.4 49 67.3
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 2.9e-10 70.5 69 52.2
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.6e-08 64.7 175 32.6
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 2.1e-08 64.3 156 34.6
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 3.5e-08 63.5 103 35.9
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 4.6e-08 63.2 108 38.9
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 6.0e-08 62.8 162 34.6
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 6.0e-08 62.8 102 34.3
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.0e-07 62.0 166 33.1
Eucgr.D01807 Eucalyptus grandis HOM05D001916 ORTHO05D003272 5.1e-07 59.7 88 37.5
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 1.1e-06 58.5 172 34.9
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 2.5e-06 57.4 164 29.9
Oeu009294.1 Olea europaea HOM05D001916 ORTHO05D003272 2.5e-06 57.4 204 26.0
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 2.5e-06 57.4 156 31.4
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 3.3e-06 57.0 132 33.3
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 3.3e-06 57.0 146 32.9
VMungo0720G2899 Vigna mungo HOM05D006451 ORTHO05D007680 3.3e-06 57.0 142 31.7
Manes.02G016700 Manihot esculenta HOM05D001916 ORTHO05D003272 4.3e-06 56.6 163 30.1
AT1G62740 Arabidopsis thaliana HOM05D002462 ORTHO05D002893 5.7e-06 56.2 129 33.3
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 5.7e-06 56.2 110 35.5
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 7.4e-06 55.8 115 32.2
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 9.6e-06 55.5 101 38.6
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 9.6e-06 55.5 101 38.6
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 9.6e-06 55.5 136 33.1


User provided reference genes

Program Settings