Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 3.1e-68 261.5 122 100.0
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.9e-13 79.0 42 85.7
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.9e-13 79.0 42 85.7
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.9e-13 79.0 42 85.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.4e-12 76.6 42 83.3
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.4e-12 76.6 41 82.9
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.4e-12 76.6 41 82.9
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.9e-12 76.3 42 81.0
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 3.2e-12 75.5 42 83.3
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.2e-12 75.5 41 80.5
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 4.2e-12 75.1 42 81.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 5.4e-12 74.7 41 82.9
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.4e-12 74.7 42 78.6
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 7.1e-12 74.3 42 78.6
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.1e-12 74.3 41 80.5
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.1e-12 74.3 41 80.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 7.1e-12 74.3 42 78.6
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 9.3e-12 73.9 42 78.6
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 9.3e-12 73.9 42 78.6
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 9.3e-12 73.9 37 89.2
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 9.3e-12 73.9 41 80.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 9.3e-12 73.9 41 80.5
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 9.3e-12 73.9 41 80.5
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 9.3e-12 73.9 41 80.5
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.2e-11 73.6 42 78.6
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.2e-11 73.6 42 78.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.2e-11 73.6 42 78.6
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.2e-11 73.6 42 78.6
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.6e-11 73.2 44 75.0
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.6e-11 73.2 42 78.6
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.6e-11 73.2 41 78.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.6e-11 73.2 42 76.2
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.6e-11 73.2 42 76.2
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.6e-11 73.2 42 78.6
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.1e-11 72.8 42 76.2
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.1e-11 72.8 42 76.2
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.7e-11 72.4 41 78.0
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.7e-11 72.4 42 78.6
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.7e-11 72.4 42 78.6
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.7e-11 72.4 41 78.0
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.7e-11 72.4 42 73.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.5e-11 72.0 42 78.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 3.5e-11 72.0 42 76.2
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.6e-11 71.6 42 76.2
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 4.6e-11 71.6 44 75.0
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 4.6e-11 71.6 42 73.8
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.6e-11 71.6 42 73.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 6.0e-11 71.2 42 73.8
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 6.0e-11 71.2 42 76.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 6.0e-11 71.2 42 76.2
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.0e-11 71.2 42 76.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.0e-11 71.2 42 76.2
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 6.0e-11 71.2 41 75.6
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 6.0e-11 71.2 41 75.6
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 6.0e-11 71.2 41 75.6
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 7.9e-11 70.9 42 73.8
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.9e-11 70.9 44 72.7
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.9e-11 70.9 44 72.7
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 7.9e-11 70.9 41 75.6
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.0e-10 70.5 42 73.8
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.0e-10 70.5 42 73.8
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.0e-10 70.5 42 73.8
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.0e-10 70.5 42 73.8
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.0e-10 70.5 42 73.8
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.0e-10 70.5 41 75.6
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 1.0e-10 70.5 42 71.4
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.0e-10 70.5 41 78.0
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.3e-10 70.1 44 70.5
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-10 70.1 44 70.5
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-10 70.1 44 70.5
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-10 70.1 44 70.5
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.3e-10 70.1 42 73.8
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.3e-10 70.1 44 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.8e-10 69.7 43 69.8
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.8e-10 69.7 42 73.8
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.8e-10 69.7 42 71.4
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 2.3e-10 69.3 41 75.6
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.3e-10 69.3 42 71.4
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.3e-10 69.3 42 71.4
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.3e-10 69.3 42 73.8
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.3e-10 69.3 44 70.5
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.3e-10 69.3 44 70.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.3e-10 69.3 42 76.2
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.3e-10 69.3 44 70.5
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.0e-10 68.9 41 73.2
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.0e-10 68.9 41 73.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 3.9e-10 68.6 41 73.2
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.9e-10 68.6 35 85.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.9e-10 68.6 42 71.4
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 5.1e-10 68.2 42 71.4
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 5.1e-10 68.2 42 69.0
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.1e-10 68.2 42 69.0
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 5.1e-10 68.2 42 73.8
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 5.1e-10 68.2 42 69.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 6.7e-10 67.8 42 69.0
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 6.7e-10 67.8 42 69.0
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 6.7e-10 67.8 42 69.0
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 6.7e-10 67.8 42 69.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 6.7e-10 67.8 42 76.2
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 8.7e-10 67.4 38 76.3
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 8.7e-10 67.4 42 73.8
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 8.7e-10 67.4 42 69.0
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 8.7e-10 67.4 38 81.6
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.7e-10 67.4 41 73.2
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.7e-10 67.4 41 73.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.1e-09 67.0 41 70.7
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-09 67.0 38 76.3
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-09 67.0 38 76.3
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.1e-09 67.0 42 69.0
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.1e-09 67.0 42 69.0
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.5e-09 66.6 42 69.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-09 66.6 35 82.9
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.5e-09 66.6 41 73.2
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.5e-09 66.6 41 73.2
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.5e-09 66.6 42 66.7
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.9e-09 66.2 42 71.4
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.9e-09 66.2 42 69.0
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.3e-09 65.5 42 66.7
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 4.3e-09 65.1 42 69.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.3e-09 65.1 42 69.0
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 5.6e-09 64.7 42 64.3
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 5.6e-09 64.7 42 64.3
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 5.6e-09 64.7 41 68.3
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 7.4e-09 64.3 38 71.1
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.6e-09 63.9 43 67.4
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.3e-08 63.5 41 65.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.3e-08 63.5 43 65.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.7e-08 62.0 39 69.2
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.7e-08 62.0 39 69.2
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 4.8e-08 61.6 42 61.9
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 6.2e-08 61.2 42 61.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 6.2e-08 61.2 40 70.0
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-07 60.5 44 65.9
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.2e-06 57.0 36 66.7


User provided reference genes

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