Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 0.0e+00 1104.4 551 100.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 2.3e-243 845.5 495 85.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 6.5e-222 774.2 501 77.8
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 9.1e-216 753.8 501 76.0
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.6e-215 753.1 500 76.0
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.0e-195 685.3 514 68.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 4.4e-194 681.8 510 67.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 7.5e-194 681.0 508 67.5
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 7.5e-194 681.0 512 67.6
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.3e-193 680.2 512 66.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.7e-193 679.9 512 67.4
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.2e-193 679.5 511 67.5
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.9e-193 679.1 562 64.4
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.7e-193 678.7 509 67.0
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.1e-192 677.2 512 65.8
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.1e-192 677.2 512 66.6
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.4e-192 676.0 511 67.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.2e-192 675.6 508 67.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.1e-192 675.2 511 67.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 5.4e-192 674.9 525 65.9
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.2e-192 674.1 513 66.9
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.2e-191 673.7 512 66.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-191 673.7 509 67.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.7e-191 672.5 510 66.7
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.0e-190 669.1 509 67.0
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.1e-189 667.2 510 66.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-189 667.2 510 66.3
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.9e-189 666.4 514 66.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.5e-189 666.0 509 65.6
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.2e-188 663.7 509 66.6
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 6.2e-188 661.4 510 66.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.4e-187 660.2 535 63.7
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.3e-187 659.4 511 64.2
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.1e-187 659.1 512 66.8
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.0e-187 658.7 518 65.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 6.8e-187 657.9 510 65.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.5e-186 656.8 513 66.5
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 4.4e-186 655.2 510 65.7
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 5.8e-186 654.8 513 65.7
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 7.5e-186 654.4 510 65.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.1e-184 650.6 514 65.2
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.4e-184 650.2 511 65.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 9.2e-184 647.5 513 65.9
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 9.2e-184 647.5 504 65.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 9.2e-184 647.5 524 63.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 9.2e-184 647.5 510 65.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.0e-183 646.4 512 64.8
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.0e-183 646.4 515 64.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.0e-183 646.4 458 70.1
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 4.6e-183 645.2 514 64.6
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.0e-183 644.8 500 65.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.0e-183 644.8 500 65.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 6.0e-183 644.8 509 64.6
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.3e-182 642.9 510 63.3
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 5.0e-182 641.7 520 64.2
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.1e-181 640.6 513 64.7
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.1e-181 640.6 503 64.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.1e-181 640.6 574 59.6
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-181 639.4 513 64.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.3e-181 639.0 508 65.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 7.3e-181 637.9 502 65.5
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.2e-180 634.8 510 63.1
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 2.3e-179 632.9 509 63.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 5.2e-179 631.7 514 63.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 5.2e-179 631.7 508 65.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 8.9e-179 630.9 594 57.1
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.6e-178 629.4 510 63.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 5.8e-178 628.2 509 63.5
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-177 627.1 522 62.5
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.4e-176 622.9 569 58.2
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.2e-176 622.5 513 62.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 4.1e-176 622.1 514 62.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.4e-176 621.7 512 62.5
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 5.4e-176 621.7 510 62.4
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.5e-175 619.0 516 61.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 7.8e-175 617.8 516 61.6
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.3e-174 617.1 551 59.0
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.0e-174 615.9 518 62.5
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 3.9e-174 615.5 510 62.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 8.6e-174 614.4 460 66.7
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 9.5e-173 610.9 510 61.4
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.6e-172 610.1 499 62.7
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.8e-172 609.4 498 62.7
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.6e-172 609.0 497 62.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 4.7e-172 608.6 507 61.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-171 606.3 510 61.2
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 3.1e-171 605.9 475 64.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.4e-170 602.1 432 69.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 7.6e-170 601.3 431 70.3
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 4.9e-169 598.6 547 57.8
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 4.9e-169 598.6 510 60.4
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-168 597.0 438 68.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.0e-166 590.9 499 60.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 2.5e-165 586.3 499 59.7
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.8e-164 582.8 500 61.6
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.2e-164 581.6 499 60.3
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.0e-162 576.6 559 56.4
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.3e-158 563.1 545 57.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.1e-157 560.8 490 60.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 5.6e-157 558.5 462 61.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.6e-154 548.1 425 64.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.3e-150 536.6 465 59.4
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 3.0e-150 536.2 449 61.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.2e-145 520.0 468 56.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.0e-142 511.1 387 66.7
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-137 493.4 370 68.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 8.4e-137 491.5 355 70.4
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.0e-134 483.0 414 61.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.9e-134 482.6 502 53.0
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.7e-129 467.2 447 57.3
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.4e-120 437.6 384 60.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.2e-119 434.5 534 44.9
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.9e-114 415.6 360 59.4
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.9e-112 410.6 442 49.3
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.0e-110 403.3 433 49.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-101 374.4 390 54.9
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.0e-98 364.0 508 42.9
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 7.0e-91 339.0 324 58.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-90 338.2 276 62.3
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.0e-78 297.0 410 45.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.4e-75 288.1 463 38.4
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.2e-67 260.4 460 36.1
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 5.0e-65 253.1 477 36.1
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 8.9e-62 242.3 244 52.5
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.7e-57 228.0 359 38.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 3.1e-54 217.2 215 53.0
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.2e-51 207.2 165 67.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.0e-49 200.7 450 31.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 3.4e-37 160.6 210 42.4
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.4e-35 153.3 102 72.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.3e-33 147.9 245 37.1
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-32 144.8 92 77.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.5e-29 135.2 158 46.8
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.9e-24 118.2 329 27.1
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 7.6e-21 106.3 109 52.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-15 88.2 60 68.3
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.9e-11 75.1 44 72.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 3.2e-11 74.3 49 75.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-08 64.7 64 60.9
Ca_24603_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 1.8e-06 58.5 397 23.4
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 6.9e-06 56.6 398 22.6


User provided reference genes

Program Settings