Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 7.5e-144 513.8 262 100.0
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 6.5e-87 324.7 265 69.8
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 3.0e-76 289.3 227 68.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 3.9e-76 288.9 269 62.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 4.4e-75 285.4 223 69.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 7.4e-75 284.6 229 67.7
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 9.7e-75 284.3 223 67.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.7e-74 283.5 217 68.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.1e-73 280.8 245 64.1
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.1e-73 280.8 221 67.4
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.8e-73 280.0 245 64.1
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.8e-73 280.0 214 67.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.4e-73 279.6 212 68.9
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.4e-73 279.6 212 68.9
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.4e-73 279.6 212 68.9
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.4e-73 279.6 199 73.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.1e-73 279.3 221 67.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 4.1e-73 278.9 242 62.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 9.1e-73 277.7 212 67.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 9.1e-73 277.7 212 67.9
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.6e-72 276.9 200 74.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.6e-72 276.9 242 63.2
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.6e-72 276.2 193 75.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 5.9e-72 275.0 222 66.7
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 5.9e-72 275.0 216 69.9
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.7e-71 273.5 214 66.8
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.8e-71 272.3 224 62.9
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 3.8e-71 272.3 225 63.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.0e-71 271.9 239 64.4
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 6.5e-71 271.6 232 64.2
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 6.5e-71 271.6 232 64.2
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 8.5e-71 271.2 197 71.6
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.1e-70 270.8 232 63.8
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.5e-70 270.4 195 70.8
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.5e-70 269.6 261 59.4
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-70 269.6 254 61.4
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.2e-70 269.2 196 70.9
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.2e-70 269.2 225 67.6
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.2e-70 268.9 224 62.9
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 7.2e-70 268.1 195 70.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 9.4e-70 267.7 257 57.6
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.2e-69 267.3 187 74.3
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 2.1e-69 266.5 196 67.9
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.1e-69 266.5 254 60.6
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.6e-69 265.8 213 64.8
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 3.6e-69 265.8 251 58.6
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 4.7e-69 265.4 223 64.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 6.1e-69 265.0 184 75.5
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 6.1e-69 265.0 209 67.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 6.1e-69 265.0 209 67.0
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 8.0e-69 264.6 204 65.7
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.0e-68 264.2 216 67.1
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.4e-68 263.8 250 58.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.4e-68 263.8 196 69.9
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.4e-68 263.8 196 69.9
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.8e-68 263.5 224 60.7
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.8e-68 263.5 189 71.4
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.8e-68 263.5 195 67.2
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.8e-68 263.5 213 66.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.3e-68 263.1 224 60.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.3e-68 263.1 253 58.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.3e-68 263.1 251 59.8
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.0e-68 262.7 188 69.7
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.0e-68 262.7 188 69.7
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.0e-68 262.3 211 66.8
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 5.2e-68 261.9 188 69.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.2e-68 261.9 260 60.0
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 6.8e-68 261.5 196 68.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-67 260.8 252 56.3
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.2e-67 260.8 141 89.4
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.2e-67 260.8 219 63.5
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.5e-67 260.4 217 65.9
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.0e-67 260.0 221 63.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.6e-67 259.6 197 68.0
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.4e-67 259.2 212 65.1
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 4.4e-67 258.8 199 68.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 9.7e-67 257.7 212 63.2
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 9.7e-67 257.7 212 63.2
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 9.7e-67 257.7 263 55.9
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.3e-66 257.3 247 57.1
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.3e-66 257.3 196 67.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.3e-66 257.3 187 71.1
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.3e-66 257.3 227 61.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 1.7e-66 256.9 252 57.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.7e-66 255.8 186 71.0
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.7e-66 255.8 196 68.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.7e-66 255.8 268 55.6
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 4.8e-66 255.4 232 59.1
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.8e-66 255.4 268 55.6
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 8.3e-66 254.6 221 61.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 8.3e-66 254.6 232 59.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.1e-65 254.2 174 76.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 1.4e-65 253.8 197 66.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 3.1e-65 252.7 202 65.8
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 4.1e-65 252.3 253 60.1
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 4.1e-65 252.3 140 89.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.2e-64 250.8 242 58.7
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.6e-64 250.4 138 88.4
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.6e-64 250.4 251 57.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.0e-63 247.7 218 63.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.7e-63 246.9 239 58.2
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.8e-63 245.7 272 53.3
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.5e-62 243.8 230 57.8
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.5e-62 243.0 243 56.8
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.5e-62 243.0 266 57.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 5.5e-62 241.9 192 64.1
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 7.2e-62 241.5 254 58.3
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.1e-61 240.0 197 62.9
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.1e-61 240.0 185 68.1
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 8.0e-61 238.0 127 89.8
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.8e-60 236.9 260 51.9
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.3e-60 236.5 236 55.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.3e-60 236.5 176 68.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.8e-60 234.6 246 54.9
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-59 234.2 212 58.5
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.5e-59 233.8 218 56.4
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.5e-59 233.8 195 61.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 4.4e-59 232.3 214 58.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.7e-58 230.3 181 66.9
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 8.3e-58 228.0 133 84.2
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.4e-57 227.3 214 57.9
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 3.1e-57 226.1 179 63.7
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.1e-57 226.1 211 59.7
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 5.4e-57 225.3 199 59.3
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.2e-56 224.2 259 50.2
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.6e-56 223.8 127 83.5
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.0e-55 221.1 143 76.9
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 8.6e-55 218.0 182 58.2
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.5e-54 216.5 127 82.7
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 5.5e-54 215.3 191 57.6
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 7.2e-54 214.9 205 58.0
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.2e-54 214.9 248 51.6
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.1e-46 191.0 174 60.9
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 5.6e-46 188.7 189 56.6
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.2e-45 187.6 106 88.7
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 2.8e-45 186.4 135 64.4
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.6e-45 186.0 161 60.9
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 8.9e-44 181.4 183 56.3
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.4e-43 179.5 178 55.6
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 7.5e-43 178.3 135 60.0
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.3e-42 177.6 165 60.6
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 3.7e-42 176.0 97 84.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.4e-42 175.3 199 52.8
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.2e-41 171.4 146 63.7
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.0e-40 170.2 97 83.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.4e-36 157.5 133 56.4
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 9.8e-35 151.4 77 96.1
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.9e-34 149.8 142 53.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-34 149.4 77 94.8
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 3.2e-33 146.4 74 93.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.5e-32 142.9 252 43.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 5.1e-31 139.0 141 53.9
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.5e-30 134.8 243 42.8
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-29 132.5 132 59.8
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.1e-28 129.8 172 49.4
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 8.3e-26 121.7 80 75.0
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 5.1e-23 112.5 72 80.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-21 107.8 112 51.8
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.5e-19 100.9 110 49.1
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-19 100.1 147 40.8
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.4e-17 94.4 47 91.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 3.2e-17 93.2 70 62.9
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 6.6e-15 85.5 52 78.8
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 8.7e-15 85.1 125 44.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-14 84.7 42 95.2
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-14 84.3 42 92.9
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-11 74.7 164 39.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 1.1e-09 68.2 37 81.1
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 4.6e-08 62.8 32 93.8
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 7.8e-08 62.0 67 55.2
SalBow6G0100 Salvia bowleyana HOM05D004281 ORTHO05D004839 2.3e-07 60.5 100 49.0
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-07 60.1 32 84.4
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 5.1e-07 59.3 91 37.4
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 8.7e-07 58.5 40 77.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 8.7e-07 58.5 40 77.5


User provided reference genes

Program Settings