Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.1e-180 635.6 323 100.0
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.3e-140 503.4 319 80.6
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.0e-118 430.6 294 74.1
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 6.7e-118 427.9 262 79.4
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.3e-116 423.7 295 73.2
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.2e-116 422.9 266 78.9
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.8e-116 421.8 263 77.9
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.8e-116 421.8 263 77.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 8.2e-116 421.0 264 77.7
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 3.1e-115 419.1 278 75.2
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 3.1e-115 419.1 266 77.8
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.5e-114 416.8 285 73.3
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.5e-114 416.8 307 70.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.6e-114 416.0 266 75.9
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 3.4e-114 415.6 313 67.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 7.7e-114 414.5 272 73.9
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.3e-113 413.7 266 74.4
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.7e-113 413.3 259 78.8
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.9e-113 412.5 266 74.8
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.8e-113 412.1 291 73.2
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.5e-113 411.4 276 74.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 6.5e-113 411.4 304 69.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 6.5e-113 411.4 296 71.6
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.4e-112 410.2 302 69.2
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.4e-112 410.2 262 76.0
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 3.2e-112 409.1 273 72.5
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 9.4e-112 407.5 331 66.2
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.2e-111 407.1 269 72.1
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.2e-111 407.1 304 67.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.0e-110 404.1 269 74.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.0e-110 404.1 270 73.0
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.8e-110 403.3 292 69.9
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.0e-110 402.5 269 73.2
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 5.2e-110 401.7 264 74.2
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 8.8e-110 401.0 264 75.0
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 8.8e-110 401.0 320 65.0
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.1e-109 400.6 267 73.4
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 1.5e-109 400.2 320 65.0
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.0e-109 399.8 273 71.4
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.6e-109 399.4 264 72.7
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.4e-109 397.9 320 64.4
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.2e-108 396.4 270 73.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.8e-108 396.0 320 64.4
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 4.8e-108 395.2 271 71.2
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 6.3e-108 394.8 273 68.9
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.1e-107 394.0 272 70.2
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.4e-107 393.7 264 73.1
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.4e-107 393.7 290 68.3
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.4e-107 392.9 271 68.3
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.4e-107 392.9 295 67.1
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.1e-107 392.5 271 68.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 4.1e-107 392.1 288 67.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 9.1e-107 391.0 298 65.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.2e-106 390.6 274 71.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.6e-106 390.2 277 69.7
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.0e-106 389.8 289 67.5
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 3.5e-106 389.0 266 68.8
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.9e-106 388.3 273 69.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.9e-106 388.3 273 69.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 7.7e-106 387.9 274 69.0
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.0e-105 387.5 307 65.5
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.3e-105 387.1 307 64.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.8e-105 385.6 320 63.1
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 5.0e-105 385.2 272 69.9
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 6.5e-105 384.8 321 63.2
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 6.5e-105 384.8 321 63.2
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 6.5e-105 384.8 274 69.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 8.5e-105 384.4 288 67.4
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 8.5e-105 384.4 288 67.7
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 8.5e-105 384.4 292 66.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.5e-104 383.6 266 68.0
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.5e-104 382.9 259 71.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.5e-104 382.9 230 81.3
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 3.2e-104 382.5 291 64.9
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 4.2e-104 382.1 274 67.9
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 4.2e-104 382.1 253 72.7
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.2e-103 380.6 230 80.4
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 2.7e-103 379.4 321 60.4
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 3.6e-103 379.0 272 68.0
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 6.1e-103 378.3 328 62.2
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-102 377.5 300 64.3
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.4e-102 377.1 266 68.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.0e-102 375.6 300 64.0
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.6e-101 372.9 247 70.9
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.2e-100 369.8 269 66.5
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-99 367.5 230 77.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 4.1e-99 365.5 274 66.8
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 4.1e-99 365.5 316 59.5
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 7.0e-99 364.8 229 76.4
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-98 363.2 237 74.3
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 2.7e-98 362.8 293 64.2
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 4.5e-98 362.1 230 73.0
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.2e-96 355.9 193 88.6
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.0e-94 349.4 368 52.4
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 4.8e-92 342.0 285 63.2
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.4e-91 340.5 261 64.4
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 4.1e-91 339.0 306 56.9
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 3.5e-90 335.9 264 62.1
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 2.6e-85 319.7 248 63.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 4.4e-85 318.9 255 60.0
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.4e-83 313.2 240 65.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-82 310.5 236 66.1
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.3e-76 290.8 242 65.7
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.3e-73 280.0 196 66.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.0e-73 279.6 236 64.8
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 9.5e-72 274.6 223 64.1
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.8e-71 273.1 192 69.8
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-62 244.2 220 60.0
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.6e-61 240.0 169 68.6
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-59 232.6 157 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.2e-58 231.1 199 56.3
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.7e-57 227.3 130 85.4
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 3.0e-57 226.5 180 64.4
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.5e-56 223.4 177 65.0
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 4.7e-55 219.2 160 69.4
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-54 218.0 172 64.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-47 194.5 122 73.8
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.6e-47 193.0 229 48.0
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-42 176.4 157 59.2
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-41 174.9 156 59.6
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-41 174.1 157 59.2
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-41 173.3 157 58.6
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-41 172.6 173 54.9
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-41 172.2 157 59.9
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-41 171.8 157 58.6
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-40 171.4 113 76.1
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-39 167.9 214 46.7
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-38 164.5 158 56.3
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.5e-37 161.0 98 78.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 4.9e-36 156.0 100 75.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-35 153.3 144 56.9
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.0e-33 148.3 157 54.8
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-33 147.5 157 53.5
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.3e-32 142.9 88 75.0
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-32 142.9 94 77.7
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 7.4e-32 142.1 160 51.2
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 7.4e-32 142.1 160 51.2
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-31 139.0 95 74.7
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-30 137.1 125 58.4
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-30 137.1 123 59.3
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 5.3e-30 136.0 229 39.3
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 3.0e-25 120.2 73 75.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-23 113.2 109 55.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-22 111.3 156 44.9
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-20 102.4 70 74.3
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-17 92.0 133 39.8
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.7e-17 92.0 55 80.0
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.5e-16 90.5 172 42.4
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-15 86.3 93 51.6
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-15 85.9 101 46.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.2e-12 77.4 55 58.2
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 2.8e-07 60.5 34 76.5


User provided reference genes

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