Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.4e-99 366.3 191 100.0
SGA_v2.0_scaffold79G25663 Striga asiatica HOM05D020950 ORTHO05D008113 2.7e-18 96.3 48 100.0
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 1.4e-17 94.0 54 96.3
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 2.3e-17 93.2 61 83.6
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 4.0e-17 92.4 61 83.6
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 2.6e-16 89.7 61 82.0
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 3.3e-16 89.4 59 81.4
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 4.4e-16 89.0 61 80.3
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 4.4e-16 89.0 61 80.3
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 4.4e-16 89.0 101 54.5
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 4.4e-16 89.0 61 82.0
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 5.7e-16 88.6 61 80.3
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 7.5e-16 88.2 59 79.7
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 7.5e-16 88.2 59 79.7
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 7.5e-16 88.2 61 78.7
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 7.5e-16 88.2 61 80.3
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 9.7e-16 87.8 61 80.3
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 9.7e-16 87.8 61 78.7
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 9.7e-16 87.8 61 78.7
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 9.7e-16 87.8 61 78.7
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 9.7e-16 87.8 61 78.7
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.3e-15 87.4 61 78.7
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 1.3e-15 87.4 61 78.7
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 78.7
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 78.7
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 78.7
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 78.7
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 77.0
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 1.7e-15 87.0 61 78.7
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 2.2e-15 86.7 61 78.7
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 2.2e-15 86.7 54 87.0
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 2.8e-15 86.3 60 80.0
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 2.8e-15 86.3 61 82.0
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 2.8e-15 86.3 61 77.0
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 2.8e-15 86.3 61 77.0
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 4.8e-15 85.5 61 77.0
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 4.8e-15 85.5 61 77.0
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 6.3e-15 85.1 61 75.4
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 6.3e-15 85.1 60 78.3
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 6.3e-15 85.1 61 73.8
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 8.2e-15 84.7 61 80.3
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.1e-14 84.3 61 73.8
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 1.1e-14 84.3 61 73.8
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 1.1e-14 84.3 65 70.8
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.4e-14 84.0 61 73.8
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.4e-14 84.0 61 73.8
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.4e-14 84.0 61 73.8
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.4e-14 84.0 61 77.0
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.8e-14 83.6 61 75.4
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 1.8e-14 83.6 61 78.7
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 1.8e-14 83.6 61 75.4
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 2.4e-14 83.2 60 75.0
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 2.4e-14 83.2 60 75.0
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 2.4e-14 83.2 60 75.0
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 2.4e-14 83.2 60 75.0
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 2.4e-14 83.2 60 75.0
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 2.4e-14 83.2 61 77.0
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 3.1e-14 82.8 61 73.8
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.1e-14 82.8 61 73.8
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 3.1e-14 82.8 61 75.4
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 4.1e-14 82.4 63 77.8
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.1e-14 82.4 61 73.8
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.1e-14 82.4 61 73.8
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 5.3e-14 82.0 70 70.0
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 7.0e-14 81.6 61 77.0
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 7.0e-14 81.6 61 80.3
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 9.1e-14 81.3 61 73.8
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 1.2e-13 80.9 53 88.7
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 1.2e-13 80.9 61 72.1
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 1.6e-13 80.5 61 77.0
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 2.0e-13 80.1 51 84.3
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.0e-13 80.1 52 86.5
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 2.7e-13 79.7 52 86.5
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 2.7e-13 79.7 61 73.8
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.7e-13 79.7 71 63.4
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 3.5e-13 79.3 71 67.6
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 4.5e-13 79.0 67 68.7
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 5.9e-13 78.6 60 71.7
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 5.9e-13 78.6 62 75.8
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 1.0e-12 77.8 61 70.5
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.0e-12 77.8 61 73.8
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 1.0e-12 77.8 58 75.9
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.0e-12 77.8 61 75.4
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 1.0e-12 77.8 63 69.8
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.7e-12 77.0 61 72.1
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.7e-12 77.0 67 64.2
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 1.7e-12 77.0 62 72.6
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.7e-12 77.0 62 69.4
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 2.2e-12 76.6 61 70.5
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 3.8e-12 75.9 61 73.8
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 5.0e-12 75.5 61 68.9
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 5.0e-12 75.5 61 68.9
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 6.5e-12 75.1 49 87.8
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 6.5e-12 75.1 61 73.8
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 8.5e-12 74.7 61 73.8
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.1e-11 74.3 61 68.9
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.5e-11 73.9 61 67.2
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.5e-11 73.9 89 55.1
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 2.5e-11 73.2 86 54.7
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.5e-11 73.2 61 68.9
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 3.2e-11 72.8 62 66.1
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 4.2e-11 72.4 61 65.6
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 4.2e-11 72.4 61 65.6
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 1.2e-10 70.9 61 68.9
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 3.6e-10 69.3 61 68.9
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 3.6e-10 69.3 61 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 4.7e-10 68.9 60 65.0
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 8.0e-10 68.2 56 67.9
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 1.4e-09 67.4 58 70.7
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 1.4e-09 67.4 57 66.7
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.8e-09 67.0 58 69.0
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 9.8e-08 61.2 48 72.9


User provided reference genes

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