Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.1e-210 737.3 691 100.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.8e-44 184.5 691 34.7
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.7e-44 183.7 712 39.5
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 4.0e-43 180.6 662 39.1
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 8.9e-43 179.5 680 34.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 6.4e-41 173.3 715 38.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.0e-38 166.0 664 44.0
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.2e-36 159.1 652 29.6
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.1e-36 156.4 667 34.0
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.4e-35 155.6 747 46.3
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.4e-35 155.6 684 37.1
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 8.9e-35 152.9 692 47.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.2e-34 152.5 705 44.0
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 9.9e-34 149.4 670 49.6
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 4.9e-33 147.1 718 47.8
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 8.3e-33 146.4 663 51.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 5.4e-32 143.7 621 52.2
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.6e-31 142.1 686 44.9
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.6e-31 140.6 698 36.1
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 4.6e-31 140.6 704 33.7
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.6e-31 140.6 650 38.3
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 6.0e-31 140.2 180 52.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 7.8e-31 139.8 789 43.2
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.7e-30 138.7 703 47.1
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 5.1e-30 137.1 684 43.4
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.1e-29 136.0 674 43.0
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.5e-29 135.6 487 39.4
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.6e-29 133.7 454 36.6
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 5.6e-29 133.7 754 39.8
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 7.3e-29 133.3 714 43.8
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.2e-28 132.5 660 38.3
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.1e-28 131.7 733 33.4
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.8e-27 128.6 736 40.8
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.8e-27 128.6 716 47.8
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 5.2e-27 127.1 493 42.4
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 8.9e-27 126.3 628 38.7
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.3e-25 122.5 488 35.7
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.1e-24 119.4 465 34.8
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.1e-24 119.4 710 41.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 5.4e-24 117.1 415 36.9
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.1e-23 115.2 704 39.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.7e-23 114.8 660 39.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 3.5e-23 114.4 566 42.9
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 7.8e-23 113.2 521 41.7
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.0e-22 112.8 372 44.4
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.3e-22 112.5 414 36.7
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.7e-22 112.1 683 40.1
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 2.3e-22 111.7 400 48.2
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.3e-22 111.7 704 32.0
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.1e-21 109.4 480 56.5
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-21 109.4 421 47.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.9e-21 108.6 482 33.6
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.5e-21 108.2 399 36.1
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 3.3e-21 107.8 480 47.7
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 3.3e-21 107.8 480 38.5
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 4.3e-21 107.5 416 41.6
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 5.6e-21 107.1 160 43.8
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.3e-21 106.7 482 34.4
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 7.3e-21 106.7 660 33.3
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.6e-20 105.5 497 37.8
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 2.8e-20 104.8 493 35.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 4.8e-20 104.0 365 36.4
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 8.1e-20 103.2 681 36.0
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.1e-19 102.8 175 40.0
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 2.4e-19 101.7 102 59.8
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.4e-19 101.7 202 37.1
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 4.0e-19 100.9 647 41.0
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 5.3e-19 100.5 520 25.4
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 6.9e-19 100.1 516 26.0
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.9e-19 100.1 628 44.6
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.0e-18 98.6 713 41.5
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.6e-18 98.2 402 39.3
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 3.4e-18 97.8 425 35.5
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 4.4e-18 97.4 682 45.7
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.6e-18 96.7 156 42.3
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 7.6e-18 96.7 152 44.7
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 7.6e-18 96.7 111 55.0
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 9.9e-18 96.3 97 55.7
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.7e-17 95.5 460 33.0
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 6.4e-17 93.6 206 36.4
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 8.4e-17 93.2 485 53.4
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.4e-17 93.2 164 39.0
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 2.4e-16 91.7 432 38.7
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.4e-16 91.7 525 24.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 3.2e-16 91.3 511 30.9
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.4e-16 90.5 183 39.9
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.5e-15 87.8 459 46.4
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 3.5e-15 87.8 669 40.1
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 4.6e-15 87.4 474 42.6
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 6.0e-15 87.0 731 34.7
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.0e-14 86.3 161 39.1
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.0e-14 86.3 161 39.1
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.0e-14 86.3 639 35.7
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 1.3e-14 85.9 205 37.1
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 1.3e-14 85.9 167 37.1
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 2.3e-14 85.1 501 29.3
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 8.7e-14 83.2 148 39.9
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.5e-13 81.6 509 45.0
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-13 81.6 385 36.4
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 4.3e-13 80.9 112 47.3
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 4.3e-13 80.9 652 39.4
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 5.6e-13 80.5 432 38.2
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 7.3e-13 80.1 461 26.7
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 9.6e-13 79.7 174 37.9
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.6e-12 79.0 513 44.6
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 2.1e-12 78.6 458 45.9
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 6.2e-12 77.0 396 51.5
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.4e-11 75.9 378 38.9
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.4e-11 75.9 378 38.9
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.4e-11 75.9 378 38.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.4e-11 75.9 565 40.5
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.2e-10 72.8 178 34.8
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.0e-10 72.0 94 51.1
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 5.8e-10 70.5 171 33.3
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 7.6e-10 70.1 377 40.3
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.3e-09 69.3 363 42.7
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.3e-09 69.3 379 38.5
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.7e-09 68.9 689 45.7
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 2.2e-09 68.6 377 43.2
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 6.4e-09 67.0 148 35.1
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 8.4e-09 66.6 111 41.4
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 4.2e-08 64.3 635 47.4
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 5.4e-08 63.9 88 47.7
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.4e-08 63.9 605 33.6
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 7.1e-08 63.5 401 28.4
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.2e-07 62.8 673 31.9
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.1e-07 62.0 363 49.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.1e-07 62.0 586 28.2
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.1e-07 62.0 370 21.9
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-06 59.3 643 21.5
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.3e-06 59.3 579 21.2
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.0e-06 58.2 686 38.3
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 5.1e-06 57.4 60 53.3
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 5.1e-06 57.4 60 53.3
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 5.1e-06 57.4 163 30.7


User provided reference genes

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