Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.6e-121 438.7 224 100.0
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 3.3e-71 272.3 151 88.1
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 8.9e-69 264.2 151 82.8
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 2.0e-68 263.1 154 84.4
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.5e-68 261.2 152 80.3
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-67 260.4 154 79.9
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.9e-67 259.2 154 79.2
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 2.9e-67 259.2 151 80.1
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.7e-67 258.8 154 79.2
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 8.3e-67 257.7 150 80.7
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.4e-66 256.9 150 79.3
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.4e-66 256.9 150 79.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.9e-66 256.5 151 81.5
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 3.2e-66 255.8 151 80.8
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.2e-66 255.8 151 80.8
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 5.4e-66 255.0 150 78.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-65 253.4 148 81.8
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.1e-65 253.1 151 78.8
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 2.1e-65 253.1 151 80.1
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.7e-65 252.7 164 73.8
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 3.5e-65 252.3 154 76.6
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 7.8e-65 251.1 151 78.8
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 7.8e-65 251.1 151 78.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 7.8e-65 251.1 151 78.8
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.0e-64 250.8 151 77.5
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.0e-64 250.8 151 77.5
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.3e-64 250.4 151 80.8
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.3e-64 250.4 151 77.5
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.7e-64 250.0 151 80.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.7e-64 250.0 151 77.5
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 2.3e-64 249.6 160 75.6
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.3e-64 249.6 151 77.5
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 3.0e-64 249.2 151 77.5
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 3.9e-64 248.8 150 77.3
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.9e-64 248.8 151 78.1
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 5.1e-64 248.4 151 77.5
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.1e-64 248.4 151 76.8
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 6.6e-64 248.1 151 76.2
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 6.6e-64 248.1 153 77.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 6.6e-64 248.1 149 77.9
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 1.1e-63 247.3 151 78.1
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-63 246.9 150 79.3
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.5e-63 246.9 151 78.8
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.5e-63 246.9 151 76.8
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.9e-63 246.5 150 79.3
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.5e-63 246.1 151 76.2
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 2.5e-63 246.1 154 79.9
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 3.3e-63 245.7 151 75.5
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 3.3e-63 245.7 152 77.6
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 4.3e-63 245.4 162 69.1
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.3e-63 245.4 150 78.7
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 4.3e-63 245.4 145 80.7
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 4.3e-63 245.4 151 75.5
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 7.3e-63 244.6 151 75.5
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 7.3e-63 244.6 151 74.2
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 9.5e-63 244.2 151 78.8
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.2e-62 243.8 151 75.5
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-62 243.4 152 74.3
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.6e-62 243.4 161 70.8
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.8e-62 242.7 162 74.1
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 2.8e-62 242.7 151 76.2
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.6e-62 242.3 152 73.7
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 3.6e-62 242.3 151 74.2
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 3.6e-62 242.3 152 76.3
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.7e-62 241.9 145 77.9
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.2e-62 241.5 161 72.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 6.2e-62 241.5 149 75.2
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 6.2e-62 241.5 151 73.5
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 8.1e-62 241.1 151 72.8
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.1e-61 240.7 151 71.5
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.4e-61 240.4 151 74.8
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.8e-61 240.0 150 76.0
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-61 240.0 151 78.1
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.8e-61 240.0 150 73.3
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.3e-61 239.6 151 73.5
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.3e-61 239.6 151 79.5
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 3.1e-61 239.2 153 75.2
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 6.8e-61 238.0 151 71.5
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.8e-61 238.0 153 74.5
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 6.8e-61 238.0 151 74.2
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.8e-61 238.0 151 76.2
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 6.8e-61 238.0 151 75.5
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.9e-61 237.7 153 74.5
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 8.9e-61 237.7 151 72.8
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 8.9e-61 237.7 152 73.7
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 8.9e-61 237.7 151 72.8
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 8.9e-61 237.7 151 72.8
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.2e-60 237.3 151 72.8
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.2e-60 237.3 155 72.3
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.0e-60 236.5 155 73.5
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 3.4e-60 235.7 151 76.2
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 7.6e-60 234.6 149 75.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.9e-60 234.2 153 74.5
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 2.2e-59 233.0 151 70.2
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.2e-59 233.0 151 75.5
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.2e-59 233.0 151 70.9
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 3.7e-59 232.3 153 71.9
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 8.4e-59 231.1 150 71.3
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.1e-58 230.7 155 69.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 2.4e-58 229.6 150 74.0
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 3.2e-58 229.2 150 70.0
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.2e-58 229.2 154 72.1
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 5.4e-58 228.4 152 70.4
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 5.4e-58 228.4 150 70.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 7.1e-58 228.0 152 69.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 9.2e-58 227.6 150 70.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 9.2e-58 227.6 152 68.4
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 2.1e-57 226.5 150 71.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.1e-57 226.5 152 69.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 3.5e-57 225.7 152 67.8
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 4.6e-57 225.3 149 75.2
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.7e-56 223.4 150 70.0
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.7e-56 223.4 150 68.0
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 6.6e-56 221.5 150 67.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 6.6e-56 221.5 150 67.3
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.3e-55 219.2 158 66.5
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 7.3e-55 218.0 151 68.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.6e-54 216.9 151 65.6
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.1e-54 216.5 150 70.0
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 3.6e-54 215.7 170 61.2
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.4e-50 203.8 151 64.9
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.4e-50 203.8 142 68.3
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.2e-50 202.2 151 63.6
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 6.0e-49 198.4 145 63.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.0e-48 197.6 150 62.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.7e-48 196.8 120 80.8
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 2.5e-47 193.0 119 77.3
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 4.3e-47 192.2 149 57.7
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.1e-46 189.9 152 61.8
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.4e-44 182.2 118 72.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 7.1e-42 174.9 125 64.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.1e-41 173.3 149 53.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.6e-41 172.2 109 70.6
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 7.9e-41 171.4 179 57.0
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.7e-40 170.2 109 70.6
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.3e-35 154.1 156 47.4
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.4e-35 151.8 95 75.8
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.1e-29 132.9 79 82.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 5.3e-29 132.1 124 53.2
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.9e-29 131.7 99 65.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.8e-27 125.9 73 76.7
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 6.5e-27 125.2 73 75.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.4e-26 124.0 76 76.3
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.9e-26 123.6 89 71.9
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 3.2e-26 122.9 75 76.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 9.3e-26 121.3 144 43.8
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.2e-25 120.9 75 80.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 3.0e-24 116.3 75 72.0
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-21 107.5 65 78.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.1e-21 106.3 65 76.9
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.7e-19 100.5 149 36.2
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.9e-12 75.5 48 77.1
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.7e-06 56.2 49 59.2


User provided reference genes

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