Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14775 Striga asiatica HOM05D002758 ORTHO05D002885 2.9e-76 288.5 146 100.0
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 9.6e-48 193.7 146 76.0
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 2.2e-28 129.4 146 54.8
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 6.5e-28 127.9 147 54.4
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.1e-24 117.1 143 55.9
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 1.3e-23 113.6 143 53.1
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 8.2e-23 110.9 146 50.7
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 1.2e-21 107.1 143 52.4
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.5e-21 106.7 143 51.0
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.3e-20 103.6 143 51.0
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.9e-20 102.4 144 47.2
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 2.5e-19 99.4 144 50.7
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.1e-18 96.3 135 52.6
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 4.4e-16 88.6 144 47.2
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 5.7e-16 88.2 143 46.2
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 9.7e-16 87.4 144 45.1
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 1.3e-15 87.0 147 42.9
Oeu045136.1 Olea europaea HOM05D002758 ORTHO05D002885 1.3e-15 87.0 141 46.8
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.7e-15 85.5 144 47.2
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 6.3e-15 84.7 144 39.6
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.4e-14 83.6 144 44.4
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 1.4e-14 83.6 144 43.8
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.4e-14 83.6 146 38.4
Oeu045145.1 Olea europaea HOM05D002758 ORTHO05D002885 2.4e-14 82.8 141 42.6
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 3.1e-14 82.4 151 39.1
CAN.G1503.1 Capsicum annuum HOM05D000091 ORTHO05D003679 5.3e-14 81.6 126 48.4
PGSC0003DMG400028538 Solanum tuberosum HOM05D002758 ORTHO05D002885 5.3e-14 81.6 101 50.5
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 2.0e-13 79.7 143 39.2
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 3.5e-13 79.0 156 42.3
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 7.7e-13 77.8 150 38.0
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.0e-12 77.4 145 40.0
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.0e-12 77.4 145 44.1
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.3e-12 77.0 142 41.5
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 1.7e-12 76.6 143 42.7
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 2.2e-12 76.3 153 37.9
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.9e-12 75.9 144 43.1
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 6.5e-12 74.7 150 40.7
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 8.5e-12 74.3 143 36.4
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.1e-11 73.9 145 36.6
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.1e-11 73.9 147 38.1
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 1.9e-11 73.2 153 41.8
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-11 73.2 149 40.9
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-11 73.2 149 40.9
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 1.9e-11 73.2 159 39.6
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.5e-11 72.8 151 39.1
Solyc06g068110.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 2.5e-11 72.8 144 42.4
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 4.2e-11 72.0 149 40.3
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 4.2e-11 72.0 143 39.2
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 4.2e-11 72.0 145 40.7
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 5.5e-11 71.6 143 35.7
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.5e-11 71.6 149 40.3
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 5.5e-11 71.6 146 38.4
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 5.5e-11 71.6 143 39.9
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 5.5e-11 71.6 145 42.1
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 7.2e-11 71.2 156 38.5
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 9.4e-11 70.9 155 40.0
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.1e-10 69.7 158 38.6
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.7e-10 69.3 142 38.7
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 4.7e-10 68.6 151 34.4
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 4.7e-10 68.6 151 34.4
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.7e-10 68.6 145 36.6
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 8.0e-10 67.8 150 39.3
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 8.0e-10 67.8 149 39.6
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 1.0e-09 67.4 143 37.1
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 1.4e-09 67.0 161 38.5
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.8e-09 66.6 161 37.9
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 2.3e-09 66.2 141 40.4
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.0e-09 65.9 159 34.0
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.0e-09 65.9 159 34.0
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.0e-09 65.9 159 34.0
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 4.0e-09 65.5 145 42.1
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.0e-09 65.5 144 37.5
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 4.0e-09 65.5 135 39.3
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 5.2e-09 65.1 144 37.5
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 5.2e-09 65.1 151 37.7
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 5.2e-09 65.1 143 39.2
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 5.2e-09 65.1 148 35.8
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 6.7e-09 64.7 157 35.7
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 6.7e-09 64.7 145 35.2
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 6.7e-09 64.7 154 35.7
PSO210G3002 Papaver somniferum HOM05D002758 ORTHO05D002885 6.7e-09 64.7 141 35.5
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 6.7e-09 64.7 147 38.1
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 8.8e-09 64.3 150 36.7
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 8.8e-09 64.3 144 38.2
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 8.8e-09 64.3 148 33.8
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 8.8e-09 64.3 150 34.7
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.2e-08 63.9 144 36.8
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 1.5e-08 63.5 144 38.2
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.5e-08 63.5 146 36.3
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 1.5e-08 63.5 145 37.2
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.5e-08 63.5 150 40.0
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 2.0e-08 63.2 147 36.7
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 2.0e-08 63.2 147 36.7
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 2.0e-08 63.2 147 36.7
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 2.0e-08 63.2 154 36.4
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 2.0e-08 63.2 151 37.1
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 2.0e-08 63.2 143 37.8
ECA240G3055 Erigeron canadensis HOM05D002758 ORTHO05D002885 2.6e-08 62.8 142 38.0
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 2.6e-08 62.8 162 38.3
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 2.6e-08 62.8 145 37.2
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 2.6e-08 62.8 143 37.8
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 3.3e-08 62.4 157 32.5
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.3e-08 62.4 145 35.2
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 3.3e-08 62.4 154 35.1
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 3.3e-08 62.4 144 36.8
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 4.4e-08 62.0 163 36.2
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 4.4e-08 62.0 147 37.4
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 4.4e-08 62.0 143 35.7
PSO210G5441 Papaver somniferum HOM05D002758 ORTHO05D002885 5.7e-08 61.6 141 33.3
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 7.5e-08 61.2 151 34.4
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 7.5e-08 61.2 144 38.9
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 7.5e-08 61.2 157 33.8
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 9.7e-08 60.8 147 36.7
THA.LOC104808985 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 9.7e-08 60.8 141 40.4
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.3e-07 60.5 142 35.9
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.3e-07 60.5 142 35.9
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 1.3e-07 60.5 146 34.9
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 1.3e-07 60.5 157 38.2
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 1.7e-07 60.1 160 33.1
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 2.2e-07 59.7 154 35.1
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.2e-07 59.7 156 34.6
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 2.2e-07 59.7 152 36.8
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.8e-07 59.3 157 38.2
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 2.8e-07 59.3 160 35.0
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.8e-07 59.3 142 35.2
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 2.8e-07 59.3 141 34.0
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.8e-07 59.3 153 35.3
HanXRQChr04g0096561 Helianthus annuus HOM05D002758 ORTHO05D002885 3.7e-07 58.9 145 34.5
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 3.7e-07 58.9 149 34.2
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 3.7e-07 58.9 146 36.3
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-07 58.9 153 34.0
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 4.8e-07 58.5 118 39.0
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 4.8e-07 58.5 155 36.8
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 6.3e-07 58.2 146 36.3
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 6.3e-07 58.2 145 39.3
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 6.3e-07 58.2 150 35.3
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 8.2e-07 57.8 144 34.0
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 8.2e-07 57.8 139 38.8
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.2e-07 57.8 155 33.5
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 1.1e-06 57.4 138 35.5
Solyc06g068100.1 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.1e-06 57.4 104 41.3
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 1.1e-06 57.4 147 38.8
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 1.4e-06 57.0 135 33.3
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 1.4e-06 57.0 149 34.2
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 1.4e-06 57.0 150 36.0
TPR.G37180 Trifolium pratense HOM05D002758 ORTHO05D002885 1.4e-06 57.0 140 34.3
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 1.8e-06 56.6 146 34.9
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.8e-06 56.6 151 33.1
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.8e-06 56.6 151 33.1
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.8e-06 56.6 152 33.6
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.4e-06 56.2 146 37.7
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 2.4e-06 56.2 167 37.1
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 3.1e-06 55.8 146 35.6
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 3.1e-06 55.8 146 35.6
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.1e-06 55.8 155 33.5
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 3.1e-06 55.8 142 34.5
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 3.1e-06 55.8 150 35.3
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 3.1e-06 55.8 154 34.4
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 4.1e-06 55.5 151 33.1
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 4.1e-06 55.5 151 31.8
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 5.3e-06 55.1 142 35.9
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 5.3e-06 55.1 155 34.8
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 5.3e-06 55.1 143 35.7
ClCG06G011200 Citrullus lanatus HOM05D002758 ORTHO05D002885 7.0e-06 54.7 154 33.8
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 7.0e-06 54.7 135 41.5
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 9.1e-06 54.3 147 33.3
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 9.1e-06 54.3 145 31.0
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 9.1e-06 54.3 154 33.1
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 9.1e-06 54.3 154 34.4
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 9.1e-06 54.3 150 37.3


User provided reference genes

Program Settings