Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 9.3e-153 543.5 273 100.0
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.9e-111 405.2 268 76.1
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.2e-105 385.6 273 72.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.6e-99 366.7 271 70.8
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.5e-97 360.1 256 70.7
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-97 360.1 266 69.5
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.9e-97 359.8 219 79.9
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.6e-96 355.5 215 79.5
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.6e-96 355.5 215 79.5
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 5.7e-94 348.2 217 77.0
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 2.8e-93 345.9 212 79.2
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 6.3e-93 344.7 246 71.1
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.1e-92 342.0 223 75.3
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.6e-91 340.1 223 74.9
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 4.5e-91 338.6 214 77.1
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 5.9e-91 338.2 232 73.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.0e-90 337.4 226 72.6
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.3e-90 337.0 215 75.8
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.3e-90 337.0 236 71.6
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.2e-90 336.3 215 76.7
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.9e-90 335.9 222 74.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.9e-90 335.9 260 66.2
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.8e-90 335.5 214 76.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 3.8e-90 335.5 214 76.6
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.8e-90 335.5 209 78.0
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.0e-90 335.1 224 74.1
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.1e-89 334.0 243 69.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.9e-89 333.2 237 71.7
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.2e-89 332.0 237 71.3
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 5.5e-89 331.6 235 70.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 9.4e-89 330.9 242 69.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.6e-88 330.1 213 76.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.6e-88 330.1 232 70.3
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.7e-88 329.3 214 74.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.7e-88 329.3 232 69.8
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 3.6e-88 328.9 249 67.9
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.6e-88 328.9 232 72.0
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 3.6e-88 328.9 222 73.9
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.7e-88 328.6 239 69.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.7e-88 328.6 213 76.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 6.1e-88 328.2 215 74.9
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.0e-88 327.8 207 75.4
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.0e-87 327.4 227 71.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.4e-87 327.0 221 71.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.4e-87 327.0 215 74.0
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.8e-87 326.6 267 63.3
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.8e-87 326.6 249 69.1
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.3e-87 326.2 215 73.5
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 3.0e-87 325.9 221 72.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.0e-87 325.9 232 69.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 4.0e-87 325.5 247 68.0
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 4.0e-87 325.5 211 74.9
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 5.2e-87 325.1 211 76.3
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 6.8e-87 324.7 216 73.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.8e-87 324.3 264 64.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 8.8e-87 324.3 222 72.1
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 8.8e-87 324.3 220 73.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.2e-86 323.9 242 66.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.2e-86 323.9 212 74.5
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 5.7e-86 321.6 242 66.1
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.3e-85 320.5 216 71.8
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.3e-85 320.5 221 71.0
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.3e-85 320.5 216 72.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.3e-85 320.5 216 70.4
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.2e-85 319.7 211 75.4
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.8e-85 319.3 242 65.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.8e-85 318.5 261 64.8
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 8.3e-85 317.8 259 64.9
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.8e-84 316.6 211 73.0
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.8e-84 316.6 211 73.5
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.8e-84 316.6 249 66.7
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.8e-84 316.6 228 68.4
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 9.1e-84 314.3 213 71.4
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.0e-83 313.2 247 64.0
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.0e-83 313.2 253 64.4
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-83 313.2 253 64.4
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.7e-83 312.8 206 74.8
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.7e-83 312.8 206 74.8
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.7e-83 312.8 206 74.8
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.7e-83 312.8 206 74.8
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.7e-83 312.8 206 74.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.7e-83 312.8 226 69.0
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 3.5e-83 312.4 221 70.6
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.5e-83 312.4 217 70.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.5e-83 312.4 252 64.7
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 5.9e-83 311.6 253 65.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 5.9e-83 311.6 221 69.2
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 7.7e-83 311.2 222 68.0
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-82 310.8 253 64.0
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.3e-82 309.7 206 73.8
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.3e-82 309.7 253 63.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-82 309.7 253 63.6
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.3e-82 309.7 211 72.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.8e-82 308.9 266 61.3
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.8e-82 308.9 206 72.8
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 5.0e-82 308.5 206 72.8
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 6.6e-82 308.1 215 70.2
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.9e-81 306.6 223 69.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.3e-81 305.8 221 69.7
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 5.5e-81 305.1 206 72.8
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.2e-81 304.7 219 67.6
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 9.5e-81 304.3 208 73.1
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.2e-80 303.9 222 68.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 2.1e-80 303.1 213 71.4
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.1e-80 303.1 216 68.1
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 6.1e-80 301.6 210 69.0
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 8.0e-80 301.2 208 72.6
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.8e-79 300.1 212 68.9
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.8e-79 300.1 226 66.4
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 5.2e-79 298.5 210 69.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 5.2e-79 298.5 254 59.8
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.0e-78 296.6 211 67.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 3.4e-78 295.8 211 68.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 4.4e-78 295.4 235 65.1
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 9.8e-78 294.3 175 80.0
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.7e-77 293.5 210 67.1
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.7e-77 292.4 211 69.2
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 6.3e-77 291.6 207 70.0
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.3e-77 291.6 198 73.2
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-76 290.8 269 57.2
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.4e-76 290.4 201 71.1
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.4e-76 289.7 238 62.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-76 289.7 207 70.0
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-76 289.7 207 70.0
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.2e-76 289.3 207 70.0
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.1e-76 288.9 221 64.3
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.2e-75 287.3 221 63.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-75 287.0 204 70.6
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 5.9e-75 285.0 207 69.1
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.3e-74 283.1 215 64.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.9e-74 282.3 180 76.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 5.0e-74 282.0 236 61.0
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 2.5e-73 279.6 217 65.9
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.6e-72 276.9 178 74.7
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.0e-72 274.6 209 63.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-70 270.0 208 63.0
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.0e-70 270.0 208 63.0
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 4.4e-70 268.9 208 62.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 4.4e-70 268.9 208 62.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 4.4e-70 268.9 208 62.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.8e-70 268.5 213 61.5
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 7.0e-68 261.5 204 66.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-67 260.0 219 62.1
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 3.1e-63 246.1 218 58.3
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.3e-58 230.7 195 59.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-57 227.3 136 80.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.3e-57 225.7 136 80.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-55 221.1 219 54.8
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.4e-55 220.7 132 81.1
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 6.8e-55 218.4 236 53.8
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 9.9e-54 214.5 208 54.8
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-53 214.2 287 46.7
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 8.1e-48 194.9 226 46.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 3.8e-45 186.0 222 47.7
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 3.9e-42 176.0 178 57.3
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.6e-40 169.5 140 60.7
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.1e-39 166.4 163 48.5
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.6e-30 135.2 86 80.2
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 3.3e-17 93.2 81 59.3
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.0e-14 84.0 89 49.4
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.0e-14 84.0 62 58.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 3.4e-14 83.2 80 55.0
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 3.3e-09 66.6 62 50.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 9.7e-09 65.1 72 50.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.1e-07 60.1 76 48.7
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.5e-06 57.8 40 65.0


User provided reference genes

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