Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 5.6e-98 360.9 180 100.0
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 4.8e-89 331.3 177 92.1
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 4.8e-73 278.1 180 77.8
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 6.9e-72 274.2 180 73.9
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 6.5e-70 267.7 180 74.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.4e-69 266.5 181 72.9
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.9e-69 266.2 185 68.6
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.5e-69 265.8 185 71.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 9.3e-69 263.8 185 68.1
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.6e-68 261.5 185 68.6
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.7e-66 254.6 185 69.7
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.6e-65 253.1 188 69.7
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-63 246.9 188 68.1
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.6e-63 245.7 181 70.7
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.0e-62 243.8 188 68.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.2e-62 242.7 188 65.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.9e-62 242.3 184 67.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.9e-62 242.3 191 62.8
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 6.5e-62 241.1 190 65.3
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.5e-62 240.7 180 66.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.4e-61 240.0 181 66.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.4e-61 237.3 183 63.4
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.7e-60 235.7 158 70.3
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 2.7e-60 235.7 180 65.6
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.6e-60 235.3 190 63.7
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 6.1e-60 234.6 184 65.8
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.0e-59 233.8 180 67.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 3.0e-59 232.3 183 67.2
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 3.9e-59 231.9 181 67.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 8.8e-59 230.7 185 67.0
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 8.8e-59 230.7 178 65.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.3e-58 228.8 180 64.4
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 4.4e-58 228.4 193 60.1
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 4.4e-58 228.4 189 60.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.7e-58 228.0 181 66.3
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 7.4e-58 227.6 186 65.1
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 9.7e-58 227.3 180 65.0
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 9.7e-58 227.3 180 62.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.7e-57 226.5 180 63.9
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-57 226.5 181 65.7
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.2e-57 226.1 141 75.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.8e-57 225.7 181 65.7
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.8e-57 224.9 181 65.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 4.8e-57 224.9 181 65.2
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 6.3e-57 224.6 225 56.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.3e-57 224.6 181 65.7
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.3e-57 224.6 187 63.1
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-56 223.8 180 64.4
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.4e-56 223.4 181 63.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.8e-56 223.0 180 61.7
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.8e-56 223.0 132 77.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.8e-56 223.0 141 74.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.4e-56 222.6 141 74.5
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.1e-56 222.2 197 60.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.1e-56 222.2 197 61.4
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.1e-56 222.2 184 61.4
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.1e-56 222.2 186 61.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 5.3e-56 221.5 183 64.5
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 6.9e-56 221.1 184 62.0
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 6.9e-56 221.1 188 60.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.5e-55 219.9 183 62.3
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.5e-55 219.9 193 59.6
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.0e-55 219.5 152 71.7
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.6e-55 219.2 182 64.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 4.5e-55 218.4 137 73.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.5e-55 218.4 137 73.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.5e-55 218.4 182 63.2
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 5.9e-55 218.0 141 70.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 5.9e-55 218.0 174 66.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 7.7e-55 217.6 190 61.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 7.7e-55 217.6 187 58.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.0e-54 217.2 187 61.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.3e-54 216.9 133 74.4
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.3e-54 216.9 137 73.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.7e-54 216.5 186 62.4
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 2.2e-54 216.1 141 70.2
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.9e-54 215.7 132 75.0
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.8e-54 215.3 141 70.2
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.8e-54 215.3 156 66.7
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 3.8e-54 215.3 185 60.0
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 5.0e-54 214.9 132 75.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 5.0e-54 214.9 186 60.2
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 5.0e-54 214.9 157 69.4
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 6.5e-54 214.5 173 61.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.5e-54 214.5 150 69.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 8.5e-54 214.2 196 58.7
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 8.5e-54 214.2 141 69.5
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.1e-53 213.8 132 74.2
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.4e-53 213.4 141 70.2
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.9e-53 213.0 141 70.2
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.9e-53 213.0 141 69.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.2e-53 212.2 129 76.0
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.2e-53 211.8 133 72.9
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 5.5e-53 211.5 224 55.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.5e-53 211.5 131 74.0
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 9.4e-53 210.7 194 58.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.6e-52 209.9 130 73.1
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-52 209.9 159 69.2
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 3.6e-52 208.8 199 55.8
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.7e-52 208.4 176 61.4
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 6.1e-52 208.0 175 62.3
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.3e-51 206.1 186 57.5
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.3e-51 206.1 140 70.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.3e-51 206.1 193 57.5
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.9e-51 205.3 156 65.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.1e-50 203.8 161 67.7
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.5e-50 203.4 150 66.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 7.4e-50 201.1 184 56.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 7.4e-50 201.1 162 63.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 3.7e-49 198.7 185 55.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 4.8e-49 198.4 179 56.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.8e-48 196.4 115 77.4
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 3.1e-48 195.7 183 59.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.1e-48 195.7 185 55.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.2e-47 193.7 170 59.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.6e-47 193.4 117 74.4
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.0e-46 190.7 164 62.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.2e-46 189.5 247 44.5
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 8.5e-46 187.6 181 58.0
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.1e-45 187.2 156 60.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.2e-45 185.7 150 62.7
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 9.4e-45 184.1 137 66.4
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.0e-44 181.0 271 41.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 4.1e-40 168.7 123 60.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.2e-37 159.1 124 58.9
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.1e-36 156.4 125 55.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.7e-34 148.3 87 75.9
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.8e-34 147.5 130 61.5
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.1e-32 142.5 86 76.7
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 4.2e-29 132.1 138 47.8
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.2e-29 132.1 112 63.4
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.0e-28 127.9 86 69.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.0e-27 125.9 150 50.7
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.4e-26 122.1 72 75.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 5.7e-26 121.7 79 65.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.7e-23 112.8 72 68.1
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.8e-22 109.0 113 44.2
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.3e-21 105.5 110 53.6
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 5.6e-21 105.1 102 44.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.2e-20 104.0 60 75.0
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 8.0e-20 101.3 65 66.2
SGA_v2.0_scaffold5G02809 Striga asiatica HOM05D005248 ORTHO05D006409 1.0e-14 84.3 143 42.7
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.5e-10 70.5 88 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.0e-10 70.1 61 54.1
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.9e-08 63.5 35 77.1


User provided reference genes

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