Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.8e-154 548.5 263 100.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 3.3e-107 392.1 235 80.4
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 6.7e-100 367.9 235 74.5
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.6e-99 365.9 235 74.0
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-99 365.9 249 72.7
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.6e-93 346.7 235 68.5
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 6.1e-93 344.7 235 66.8
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.2e-92 341.7 235 67.2
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.4e-89 333.6 238 65.5
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.6e-88 329.3 235 65.1
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 4.5e-88 328.6 236 62.3
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 6.5e-87 324.7 235 63.8
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.5e-86 322.8 235 61.7
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.2e-86 322.4 234 63.2
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.2e-85 320.5 235 62.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.6e-85 320.1 237 62.4
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.7e-85 319.3 237 62.0
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.7e-85 319.3 235 62.1
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.7e-85 318.5 235 63.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 6.1e-85 318.2 234 62.8
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.1e-85 318.2 235 63.8
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.0e-84 317.4 235 63.8
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.3e-84 316.2 234 62.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 4.0e-84 315.5 235 62.6
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.2e-83 313.9 235 62.1
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.0e-83 313.2 235 63.0
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 3.3e-83 312.4 255 60.8
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 5.7e-83 311.6 235 61.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 9.7e-83 310.8 275 54.9
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.7e-82 310.1 235 62.6
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.7e-82 310.1 235 60.9
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-82 309.7 238 61.3
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-82 309.7 238 61.3
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.8e-82 309.3 236 62.3
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 6.3e-82 308.1 238 60.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.3e-82 308.1 238 60.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.3e-82 308.1 238 60.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 6.3e-82 308.1 274 55.5
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-81 307.0 233 63.9
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.4e-81 307.0 238 61.8
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.1e-81 305.8 239 58.2
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 7.0e-81 304.7 234 61.5
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 7.0e-81 304.7 237 59.9
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 7.0e-81 304.7 236 59.3
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 9.1e-81 304.3 238 62.6
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.7e-80 302.8 238 60.5
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 5.9e-80 301.6 235 57.9
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.8e-79 298.9 178 78.7
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 6.5e-79 298.1 234 59.4
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.1e-78 297.4 236 58.5
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.9e-78 296.6 235 57.9
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 4.2e-78 295.4 236 59.3
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.2e-78 295.4 235 60.4
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.2e-78 294.7 235 59.1
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.2e-77 293.9 239 59.0
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.1e-77 291.6 235 56.6
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 6.1e-77 291.6 198 67.7
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 8.0e-77 291.2 236 58.5
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.0e-76 290.8 238 58.8
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.0e-76 290.8 235 60.0
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.0e-76 290.8 235 58.3
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.8e-76 290.0 249 58.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.3e-76 289.7 235 57.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 3.0e-76 289.3 236 58.1
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.0e-76 288.9 235 59.1
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 5.2e-76 288.5 235 59.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 8.8e-76 287.7 234 58.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 8.8e-76 287.7 233 55.8
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.2e-75 287.3 237 57.8
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.0e-75 286.6 235 57.9
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.0e-75 286.6 238 58.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 4.4e-75 285.4 235 56.6
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 9.8e-75 284.3 258 53.1
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 9.8e-75 284.3 235 57.9
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.7e-74 283.5 236 58.1
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.2e-74 283.1 235 56.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 4.8e-74 282.0 235 56.6
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 6.3e-74 281.6 237 57.8
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.3e-74 281.2 185 67.0
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.3e-74 281.2 185 67.0
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 8.3e-74 281.2 235 57.4
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 3.1e-73 279.3 302 49.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.1e-73 278.9 218 57.8
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.2e-72 277.3 257 52.5
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.5e-72 275.8 197 61.9
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.3e-71 273.9 236 57.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.7e-71 273.5 277 50.2
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.1e-70 270.8 236 54.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.9e-70 270.0 206 59.7
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.5e-70 268.5 231 56.3
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.2e-69 267.3 237 53.6
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.6e-69 265.8 234 55.1
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.3e-68 263.1 218 56.4
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 5.4e-65 251.9 237 51.5
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 7.0e-65 251.5 180 63.3
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 9.2e-65 251.1 237 51.9
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.2e-64 250.8 194 57.7
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.6e-64 250.4 178 62.4
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 9.5e-62 241.1 186 61.3
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-61 240.7 234 50.4
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.5e-59 233.8 197 57.4
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.8e-57 226.9 279 44.4
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.1e-57 225.7 196 56.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 5.4e-57 225.3 158 61.4
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.3e-54 215.7 196 52.6
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.2e-53 214.2 209 53.1
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.8e-53 213.0 161 60.2
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.4e-51 206.1 191 51.3
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.7e-50 202.6 174 56.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 7.0e-49 198.4 185 50.3
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.9e-47 192.6 172 55.8
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.0e-47 192.2 151 61.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 8.6e-47 191.4 164 53.7
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.6e-47 191.4 149 60.4
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.3e-46 189.5 166 56.0
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 2.1e-45 186.8 243 44.0
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 8.1e-45 184.9 200 45.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.4e-44 184.1 196 48.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.0e-44 182.6 224 41.5
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.3e-42 177.6 191 45.0
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-42 177.6 130 66.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.7e-40 169.9 203 41.9
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.7e-39 167.2 125 62.4
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.3e-39 166.8 167 49.1
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 6.6e-39 165.2 136 56.6
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.6e-38 162.2 119 58.8
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.1e-36 156.4 235 43.0
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.2e-36 155.6 150 54.7
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.9e-34 149.8 119 58.8
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.8e-34 149.4 205 39.5
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-32 141.7 86 73.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.3e-31 140.2 198 38.9
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-31 139.8 113 58.4
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.1e-31 139.0 86 72.1
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.6e-31 138.7 86 72.1
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.9e-30 137.1 86 69.8
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 3.4e-27 126.3 200 35.5
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 3.8e-26 122.9 92 60.9
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.9e-26 122.5 67 76.1
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.4e-26 121.7 67 77.6
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-25 121.3 67 74.6
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 8.7e-23 111.7 215 33.5
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.5e-22 110.9 81 69.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.3e-22 109.4 204 34.3
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.5e-19 100.9 106 49.1
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.2e-18 97.1 69 62.3
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 3.8e-18 96.3 126 41.3
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.4e-17 93.6 59 72.9
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 5.1e-15 85.9 63 60.3
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.9e-14 84.0 82 51.2
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 8.1e-13 78.6 73 56.2
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-12 78.2 74 47.3
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.6e-11 73.6 119 34.5
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.3e-10 71.2 53 58.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.7e-10 70.9 50 56.0
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.4e-09 67.0 55 56.4
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.3e-07 61.2 52 50.0
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 3.9e-07 59.7 137 28.5


User provided reference genes

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