Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14639 Striga asiatica HOM05D011217 ORTHO05D013910 6.2e-100 367.5 185 100.0
SGA_v2.0_scaffold90G27784 Striga asiatica HOM05D002693 ORTHO05D008074 6.2e-100 367.5 185 99.5
SGA_v2.0_scaffold659G53391 Striga asiatica HOM05D011217 ORTHO05D013910 6.9e-83 310.8 157 100.0
SGA_v2.0_scaffold3G01524 Striga asiatica HOM05D011217 ORTHO05D013910 2.4e-64 249.2 124 92.7
SGA_v2.0_scaffold44G16775 Striga asiatica HOM05D011217 ORTHO05D013910 5.9e-42 174.9 188 55.3
SGA_v2.0_scaffold225G43046 Striga asiatica HOM05D011217 ORTHO05D013910 2.5e-24 116.3 159 39.0
SGA_v2.0_scaffold260G45875 Striga asiatica HOM05D011217 ORTHO05D013910 1.2e-15 87.4 116 37.9
SGA_v2.0_scaffold109G31168 Striga asiatica HOM05D011217 ORTHO05D013910 6.3e-12 75.1 93 35.5
SGA_v2.0_scaffold223G42834 Striga asiatica HOM05D011217 ORTHO05D013910 2.4e-11 73.2 172 31.4
SGA_v2.0_scaffold74G24728 Striga asiatica HOM05D011217 ORTHO05D013910 4.1e-11 72.4 166 33.1
Sc03g0004530 Simmondsia chinensis HOM05D000876 ORTHO05D000285 9.1e-11 71.2 114 28.1
QL07p023043 Quercus lobata HOM05D003171 ORTHO05D000921 3.5e-10 69.3 101 36.6
QL03p032583 Quercus lobata HOM05D000034 ORTHO05D000921 5.9e-10 68.6 101 36.6
QL04p024672 Quercus lobata HOM05D000034 ORTHO05D000921 5.9e-10 68.6 101 36.6
Lalb_Chr06g0172711 Lupinus albus HOM05D000665 ORTHO05D000140 7.7e-10 68.2 111 32.4
Medtr8g054100 Medicago truncatula HOM05D000876 ORTHO05D000285 1.7e-09 67.0 97 27.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.3e-09 66.6 97 27.8
Medtr1g016370 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-09 65.5 97 27.8
Dinv09638 Davidia involucrata HOM05D008473 ORTHO05D000921 8.6e-09 64.7 103 34.0
Lj1g0012065 Lotus japonicus HOM05D000876 ORTHO05D000285 8.6e-09 64.7 115 29.6
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 8.6e-09 64.7 117 29.9
Dinv23965 Davidia involucrata HOM05D000665 ORTHO05D000140 2.5e-08 63.2 116 28.4
Lj1g0024899 Lotus japonicus HOM05D000665 ORTHO05D000921 2.5e-08 63.2 93 35.5
Psat0s3985g0040 Pisum sativum HOM05D000665 ORTHO05D000140 3.2e-08 62.8 111 28.8
Lj2g0013227 Lotus japonicus HOM05D007209 ORTHO05D000921 4.2e-08 62.4 94 35.1
Glyma.02G193300 Glycine max HOM05D000665 ORTHO05D000140 5.5e-08 62.0 126 27.8
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 5.5e-08 62.0 108 29.6
Dinv05111 Davidia involucrata HOM05D008473 ORTHO05D000921 7.2e-08 61.6 94 34.0
Medtr3g110155 Medicago truncatula HOM05D000876 ORTHO05D000285 7.2e-08 61.6 86 33.7
Medtr8g006585 Medicago truncatula HOM05D000876 ORTHO05D000285 7.2e-08 61.6 86 33.7
Medtr8g006695 Medicago truncatula HOM05D000876 ORTHO05D000285 7.2e-08 61.6 86 33.7
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 9.5e-08 61.2 86 31.4
SGA_v2.0_scaffold74G24724 Striga asiatica HOM05D011217 ORTHO05D013910 9.5e-08 61.2 108 34.3
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 1.2e-07 60.8 100 29.0
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 1.6e-07 60.5 107 26.2
Atru.chr5.3274 Acer truncatum HOM05D003171 ORTHO05D000921 2.8e-07 59.7 101 30.7
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 2.8e-07 59.7 118 26.3
QL02p070399 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-07 59.7 104 29.8
QL05p040133 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-07 59.7 104 29.8
QL06p033820 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-07 59.7 104 28.8
QL09p025174 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-07 59.7 104 29.8
QL09p032434 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-07 59.7 104 29.8
QL10p053818 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-07 59.7 104 29.8
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-07 59.3 119 27.7
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-07 59.3 119 27.7
QL05p062248 Quercus lobata HOM05D003171 ORTHO05D000921 3.6e-07 59.3 104 30.8
CSS0009073 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.7e-07 58.9 101 31.7
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 4.7e-07 58.9 101 26.7
CDE08G1498 Ceratophyllum demersum HOM05D000665 ORTHO05D000140 4.7e-07 58.9 101 30.7
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.7e-07 58.9 119 27.7
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.7e-07 58.9 119 27.7
FAN20G0415 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.7e-07 58.9 119 27.7
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 4.7e-07 58.9 100 28.0
Lalb_Chr24g0401891 Lupinus albus HOM05D000665 ORTHO05D000140 4.7e-07 58.9 131 29.0
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.1e-07 58.5 119 27.7
Lj1g0016372 Lotus japonicus HOM05D000665 ORTHO05D000140 6.1e-07 58.5 111 28.8
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 8.0e-07 58.2 121 29.8
CDE02G1726 Ceratophyllum demersum HOM05D000665 ORTHO05D000140 8.0e-07 58.2 101 30.7
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 8.0e-07 58.2 119 26.9
FvH4_2g04530 Fragaria vesca HOM05D000034 ORTHO05D000037 8.0e-07 58.2 112 28.6
FvH4_2g11122 Fragaria vesca HOM05D000876 ORTHO05D000285 8.0e-07 58.2 112 28.6
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 8.0e-07 58.2 100 28.0
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 1.0e-06 57.8 119 27.7
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.4e-06 57.4 103 31.1
CANSAT64G1510 Cannabis sativa HOM05D000665 ORTHO05D000140 1.4e-06 57.4 100 26.0
Migut.A00363 Erythranthe guttata HOM05D000665 ORTHO05D000140 1.4e-06 57.4 97 33.0
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-06 57.4 116 28.4
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-06 57.4 116 28.4
RcHm_v2.0_Chr2g0153151 Rosa chinensis HOM05D000876 ORTHO05D000285 1.4e-06 57.4 109 26.6
MELO3C015342.2 Cucumis melo HOM05D000665 ORTHO05D000140 1.8e-06 57.0 111 30.6
MELO3C035039.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.8e-06 57.0 106 28.3
Dinv39109 Davidia involucrata HOM05D000665 ORTHO05D000921 1.8e-06 57.0 102 30.4
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-06 57.0 119 26.9
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 1.8e-06 57.0 116 28.4
Dinv02799 Davidia involucrata HOM05D000665 ORTHO05D000921 2.3e-06 56.6 102 30.4
Dinv20825 Davidia involucrata HOM05D007209 ORTHO05D000921 2.3e-06 56.6 102 33.3
Dinv32776 Davidia involucrata HOM05D007209 ORTHO05D000921 2.3e-06 56.6 102 33.3
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.3e-06 56.6 109 26.6
Glyma.10G083600 Glycine max HOM05D000665 ORTHO05D000140 2.3e-06 56.6 126 27.0
TWI12G0103 Tripterygium wilfordii HOM05D000665 ORTHO05D000140 2.3e-06 56.6 102 34.3
TAR629G1791 Trochodendron aralioides HOM05D000665 ORTHO05D000921 2.3e-06 56.6 89 34.8
COL.COLO4_15868 Corchorus olitorius HOM05D003171 ORTHO05D000921 3.0e-06 56.2 101 27.7
CiPaw.10G139000 Carya illinoinensis HOM05D000876 ORTHO05D000285 4.0e-06 55.8 100 26.0
Sed0012912 Sechium edule HOM05D000665 ORTHO05D000140 4.0e-06 55.8 110 28.2
MELO3C030897.2 Cucumis melo HOM05D007209 ORTHO05D000921 5.2e-06 55.5 106 28.3
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 5.2e-06 55.5 100 27.0
PSO507G0009 Papaver somniferum HOM05D000876 ORTHO05D000285 5.2e-06 55.5 100 28.0
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 5.2e-06 55.5 142 24.6
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 6.8e-06 55.1 101 24.8
Medtr5g055390 Medicago truncatula HOM05D000876 ORTHO05D000285 6.8e-06 55.1 81 27.2
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 6.8e-06 55.1 104 26.9
Gohir.A08G041433 Gossypium hirsutum HOM05D000665 ORTHO05D000140 8.8e-06 54.7 102 27.5
Gohir.D08G051376 Gossypium hirsutum HOM05D000665 ORTHO05D000140 8.8e-06 54.7 102 27.5
Gohir.D08G051400 Gossypium hirsutum HOM05D000665 ORTHO05D000140 8.8e-06 54.7 102 27.5
PGR044G1967 Punica granatum HOM05D000665 ORTHO05D000140 8.8e-06 54.7 116 27.6


User provided reference genes

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