Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.2e-58 229.6 113 100.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.6e-48 195.3 112 83.0
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 2.7e-45 185.3 115 82.6
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 4.5e-45 184.5 111 82.0
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 3.2e-43 178.3 113 81.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.8e-41 170.6 113 74.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 8.8e-41 170.2 113 73.5
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 4.4e-40 167.9 113 74.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.4e-40 167.9 113 74.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.3e-39 166.4 113 73.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.8e-39 164.5 113 72.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.1e-38 163.3 113 73.5
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.8e-38 162.5 114 72.8
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.4e-38 162.2 113 73.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.4e-38 162.2 114 72.8
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.4e-38 162.2 112 71.4
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.4e-38 161.0 114 71.1
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 9.1e-38 160.2 112 70.5
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.9e-37 157.5 114 69.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-36 156.4 114 69.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.7e-36 156.0 113 69.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.7e-36 156.0 113 72.6
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.2e-36 155.6 112 68.8
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.9e-36 155.2 141 59.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.9e-36 155.2 113 69.9
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.1e-35 153.3 113 68.1
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.5e-35 152.9 111 69.4
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.5e-35 152.9 113 67.3
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 5.5e-35 151.0 118 67.8
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.2e-35 150.6 113 67.3
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 9.5e-35 150.2 114 69.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-34 149.8 114 68.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-34 149.8 114 65.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.8e-34 148.7 113 66.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.6e-34 148.3 91 74.7
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 4.7e-34 147.9 92 76.1
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.7e-34 147.9 102 69.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.1e-34 147.5 113 65.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 8.0e-34 147.1 113 69.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.0e-34 147.1 113 65.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.0e-33 146.7 115 69.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.4e-33 146.4 113 66.4
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.4e-33 146.4 113 65.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.4e-33 146.4 113 65.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-33 146.0 98 71.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-33 146.0 98 71.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.8e-33 146.0 98 71.4
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.3e-33 145.6 113 64.6
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 3.0e-33 145.2 89 76.4
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.0e-33 145.2 112 65.2
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 4.0e-33 144.8 86 79.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 4.0e-33 144.8 86 79.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 4.0e-33 144.8 90 73.3
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 4.0e-33 144.8 104 71.2
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 4.0e-33 144.8 88 76.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 5.2e-33 144.4 113 64.6
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.2e-33 144.4 104 71.2
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 6.8e-33 144.1 116 65.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 6.8e-33 144.1 112 67.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 6.8e-33 144.1 113 68.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.8e-33 144.1 117 65.8
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 6.8e-33 144.1 101 70.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 8.8e-33 143.7 114 65.8
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.2e-32 143.3 113 61.1
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.2e-32 143.3 90 72.2
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.2e-32 143.3 88 77.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.6e-32 142.1 109 69.7
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.6e-32 142.1 112 64.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.6e-32 142.1 113 66.4
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 5.7e-32 141.0 109 68.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.7e-32 141.0 111 64.9
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 5.7e-32 141.0 104 70.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 7.5e-32 140.6 114 61.4
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 7.5e-32 140.6 114 64.0
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 9.8e-32 140.2 113 59.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.3e-31 139.8 109 66.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 2.8e-31 138.7 114 65.8
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.7e-31 138.3 113 59.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.7e-31 138.3 111 67.6
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 4.9e-31 137.9 110 64.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.3e-31 137.5 114 65.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 8.3e-31 137.1 89 71.9
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.1e-30 136.7 108 63.0
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.4e-30 136.3 155 51.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 88 71.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.4e-30 135.6 113 60.2
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.4e-30 135.6 88 71.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.1e-30 135.2 84 75.0
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.1e-30 135.2 113 59.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.1e-30 134.8 98 68.4
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 4.1e-30 134.8 113 59.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 5.4e-30 134.4 113 58.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 5.4e-30 134.4 113 58.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 5.4e-30 134.4 86 74.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 5.4e-30 134.4 113 58.4
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 7.0e-30 134.0 113 58.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 7.0e-30 134.0 113 58.4
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.0e-30 134.0 118 57.6
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 9.2e-30 133.7 113 59.3
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.2e-29 133.3 113 58.4
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-29 132.5 104 63.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.7e-29 132.1 83 77.1
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.7e-29 132.1 113 59.3
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.5e-29 131.7 113 59.3
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.0e-28 130.2 113 57.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-28 129.8 113 58.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.7e-28 129.4 113 58.4
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.7e-28 129.4 147 51.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.7e-28 129.4 113 61.1
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.3e-28 129.0 113 55.8
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-28 128.6 113 56.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.8e-28 128.3 113 60.2
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.8e-28 128.3 103 64.1
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.0e-28 127.9 110 57.3
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 5.0e-28 127.9 85 70.6
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 8.6e-28 127.1 86 72.1
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 8.6e-28 127.1 92 67.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.1e-27 126.7 118 60.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-27 126.7 85 70.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 9.5e-27 123.6 117 59.0
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-26 123.2 158 46.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.3e-25 119.0 91 65.9
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.3e-25 119.0 106 55.7
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.0e-25 118.6 211 37.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 4.0e-25 118.2 123 52.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.0e-25 118.2 93 60.2
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.5e-24 116.3 92 60.9
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.4e-24 115.2 106 60.4
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.5e-24 114.0 93 59.1
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.2e-23 112.5 101 55.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.7e-23 111.7 112 55.4
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.7e-23 111.7 72 70.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.4e-22 109.8 77 66.2
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.4e-22 109.0 77 64.9
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-21 106.7 90 62.2
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.6e-21 106.3 89 57.3
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.9e-21 104.4 92 58.7
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 6.6e-20 100.9 95 60.0
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.1e-19 100.1 86 59.3
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.1e-18 95.9 86 64.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.8e-17 92.8 87 59.8
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.3e-17 92.4 68 64.7
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 6.8e-17 90.9 51 80.4
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.0e-16 89.4 65 64.6
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.0e-16 89.4 74 59.5
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.6e-16 89.0 77 55.8
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.6e-16 89.0 77 55.8
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 5.8e-16 87.8 99 45.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.4e-14 82.4 68 48.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 7.0e-14 80.9 49 79.6
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 7.0e-14 80.9 83 56.6
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 4.6e-13 78.2 69 55.1
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.8e-13 77.4 61 63.9
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.7e-12 76.3 60 58.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.5e-11 73.2 98 40.8
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.6e-10 68.6 71 52.1
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 4.7e-10 68.2 55 58.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 4.0e-09 65.1 65 49.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 4.0e-09 65.1 65 49.2
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.2e-08 63.5 78 47.4
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.8e-08 61.2 49 67.3
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 7.5e-08 60.8 72 44.4
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-06 55.1 47 59.6


User provided reference genes

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