Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 3.8e-71 271.6 154 100.0
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 6.1e-69 264.2 154 98.1
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 3.1e-52 208.8 151 77.5
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 7.0e-49 197.6 138 79.7
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 1.6e-48 196.4 149 73.8
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 2.0e-48 196.1 142 77.5
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 7.8e-48 194.1 139 76.3
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 1.7e-47 193.0 139 77.0
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 3.0e-47 192.2 146 71.9
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 3.9e-47 191.8 152 69.7
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 1.1e-46 190.3 145 74.5
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 1.1e-46 190.3 139 75.5
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 1.9e-46 189.5 142 76.1
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 1.9e-46 189.5 152 69.7
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 2.5e-46 189.1 133 76.7
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 5.6e-46 188.0 128 79.7
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 2.8e-45 185.7 152 69.7
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 4.7e-45 184.9 142 72.5
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 2.3e-44 182.6 144 71.5
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 2.3e-44 182.6 144 71.5
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 3.1e-44 182.2 130 75.4
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 8.9e-44 180.6 151 66.9
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 1.2e-43 180.3 148 68.2
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 1.5e-43 179.9 150 66.0
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 2.0e-43 179.5 146 69.9
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 2.0e-43 179.5 142 66.9
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 2.6e-43 179.1 148 68.9
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 2.6e-43 179.1 130 76.9
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 3.4e-43 178.7 146 69.2
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 7.5e-43 177.6 129 72.9
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 9.8e-43 177.2 123 77.2
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 1.3e-42 176.8 152 62.5
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.7e-42 176.4 147 69.4
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 1.7e-42 176.4 147 66.0
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 3.7e-42 175.3 141 67.4
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 3.7e-42 175.3 147 66.0
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 4.9e-42 174.9 147 64.6
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 8.3e-42 174.1 138 67.4
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 8.3e-42 174.1 151 64.2
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.1e-41 173.7 132 71.2
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.1e-41 173.7 132 71.2
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 1.4e-41 173.3 142 66.9
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 1.4e-41 173.3 123 78.9
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 1.9e-41 172.9 147 65.3
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 2.4e-41 172.6 147 63.3
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 2.4e-41 172.6 141 68.1
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 3.2e-41 172.2 128 70.3
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 5.4e-41 171.4 136 69.1
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 1.2e-40 170.2 142 66.2
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 2.7e-40 169.1 137 67.9
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 2.7e-40 169.1 140 66.4
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 3.5e-40 168.7 152 64.5
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 3.5e-40 168.7 127 72.4
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 4.6e-40 168.3 157 61.1
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 4.6e-40 168.3 140 66.4
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 6.0e-40 167.9 140 66.4
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 7.8e-40 167.5 125 71.2
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 1.0e-39 167.2 150 61.3
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 1.3e-39 166.8 109 79.8
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 1.7e-39 166.4 134 67.9
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 1.7e-39 166.4 140 65.0
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 3.0e-39 165.6 157 59.2
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 3.0e-39 165.6 133 66.9
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 6.6e-39 164.5 143 63.6
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 6.6e-39 164.5 121 73.6
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 8.6e-39 164.1 141 68.1
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 8.6e-39 164.1 140 62.1
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 1.5e-38 163.3 154 61.0
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 1.5e-38 163.3 142 65.5
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 2.5e-38 162.5 143 62.9
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 4.3e-38 161.8 157 58.6
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 7.3e-38 161.0 143 62.2
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 7.3e-38 161.0 143 62.2
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 2.1e-37 159.5 113 73.5
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 4.7e-37 158.3 152 59.9
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 4.7e-37 158.3 152 59.9
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 4.7e-37 158.3 144 62.5
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 4.7e-37 158.3 146 60.3
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 3.1e-36 155.6 129 62.0
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 8.9e-36 154.1 140 60.7
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 8.9e-36 154.1 137 63.5
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.5e-35 153.3 137 61.3
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 1.5e-35 153.3 146 56.2
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 2.0e-35 152.9 151 58.3
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 3.4e-35 152.1 142 62.0
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 3.4e-35 152.1 131 64.1
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 4.4e-35 151.8 143 61.5
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 5.8e-35 151.4 135 63.7
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 5.8e-35 151.4 152 56.6
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 9.9e-35 150.6 131 61.8
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.3e-34 150.2 165 54.5
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 2.2e-34 149.4 137 60.6
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 2.2e-34 149.4 137 62.0
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 2.2e-34 149.4 137 60.6
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 2.2e-34 149.4 139 56.1
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 2.2e-34 149.4 137 61.3
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 2.9e-34 149.1 137 59.9
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 2.9e-34 149.1 137 59.9
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 3.7e-34 148.7 137 60.6
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 8.4e-34 147.5 119 66.4
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 8.4e-34 147.5 140 57.9
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 5.4e-33 144.8 174 51.1
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 2.1e-32 142.9 204 46.6
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 6.0e-32 141.4 131 60.3
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 1.0e-31 140.6 141 57.4
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 3.9e-31 138.7 137 59.1
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.5e-30 136.7 131 58.0
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 2.5e-30 136.0 126 61.9
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 4.3e-30 135.2 148 54.1
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 1.2e-29 133.7 113 66.4
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 2.8e-29 132.5 147 52.4
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 4.7e-29 131.7 140 55.7
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 1.5e-27 126.7 107 63.6
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.6e-24 116.7 105 64.8
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 2.1e-24 116.3 309 32.4
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.0e-23 114.0 142 53.5
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 5.3e-20 101.7 70 74.3
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 9.0e-20 100.9 101 58.4
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 1.2e-16 90.5 70 67.1
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 1.2e-16 90.5 156 40.4
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.0e-15 87.4 137 42.3
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 6.6e-15 84.7 135 42.2
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.4e-12 77.0 142 41.5
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 3.1e-12 75.9 76 59.2
MBI15_g37973_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 9.3e-09 64.3 80 51.2
SGA_v2.0_scaffold74G24651 Striga asiatica HOM05D006148 ORTHO05D399151 1.0e-07 60.8 51 70.6


User provided reference genes

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