Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 1.4e-153 547.7 266 100.0
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.3e-82 312.0 260 59.6
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 5.4e-57 226.9 224 50.9
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.5e-54 218.8 188 51.1
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 9.5e-54 216.1 188 53.7
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 4.7e-53 213.8 156 66.0
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 4.7e-53 213.8 268 43.7
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 8.0e-53 213.0 188 52.7
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 6.8e-52 209.9 185 53.0
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 8.9e-52 209.5 248 43.1
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 2.0e-51 208.4 268 42.5
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 5.7e-51 206.8 185 50.8
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 7.5e-51 206.5 217 47.9
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.3e-50 205.7 176 57.4
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.1e-49 202.6 179 53.1
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.4e-49 202.2 239 44.4
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 3.1e-49 201.1 192 50.5
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 9.2e-49 199.5 173 53.8
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 1.6e-48 198.7 258 43.0
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 2.7e-48 198.0 174 52.3
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 3.5e-48 197.6 188 51.1
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 4.5e-48 197.2 175 53.7
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.8e-48 196.4 175 50.3
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.5e-46 191.4 188 48.9
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 3.3e-46 191.0 188 49.5
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 4.3e-46 190.7 190 50.0
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 7.3e-46 189.9 179 50.8
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.2e-45 189.1 188 48.4
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.4e-44 185.7 175 49.1
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 1.8e-44 185.3 164 52.4
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 6.8e-44 183.3 172 49.4
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 6.8e-44 183.3 190 49.5
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 4.4e-43 180.6 174 46.0
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 4.4e-43 180.6 164 50.6
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 5.8e-43 180.3 160 55.6
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 1.3e-42 179.1 158 55.7
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 1.1e-41 176.0 166 50.6
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 1.1e-41 176.0 188 47.9
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 7.0e-41 173.3 178 46.1
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 2.7e-40 171.4 167 50.9
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 6.0e-40 170.2 160 49.4
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 1.3e-39 169.1 216 40.3
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.0e-39 167.9 188 47.9
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 3.9e-39 167.5 206 42.2
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 3.9e-39 167.5 174 47.7
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 1.6e-37 162.2 167 48.5
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 8.0e-37 159.8 179 43.6
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 6.8e-36 156.8 154 50.0
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 8.9e-36 156.4 164 48.2
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 1.5e-35 155.6 168 47.0
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 2.0e-35 155.2 155 48.4
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 4.4e-35 154.1 164 46.3
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 7.5e-35 153.3 189 42.9
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 7.5e-35 153.3 188 41.5
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 1.7e-34 152.1 189 42.3
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 2.9e-34 151.4 146 48.6
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 3.7e-34 151.0 189 42.3
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 4.9e-34 150.6 163 49.1
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 6.4e-34 150.2 163 47.9
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 8.3e-34 149.8 156 46.2
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.4e-33 149.1 188 40.4
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 2.4e-33 148.3 192 37.0
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.2e-32 146.0 138 51.4
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 1.2e-32 146.0 184 41.3
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.1e-32 145.2 212 36.8
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 3.5e-32 144.4 153 47.1
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 1.0e-31 142.9 176 41.5
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 3.0e-31 141.4 179 38.5
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 3.9e-31 141.0 194 39.7
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 6.6e-31 140.2 149 45.6
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 6.6e-31 140.2 166 42.8
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 8.6e-31 139.8 176 41.5
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 4.3e-30 137.5 162 43.8
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.6e-29 135.6 105 58.1
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 2.8e-29 134.8 162 43.2
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 2.3e-28 131.7 183 39.3
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 3.1e-28 131.3 137 46.0
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 6.8e-28 130.2 164 42.7
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 1.5e-27 129.0 157 42.7
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 2.6e-27 128.3 157 42.0
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 2.9e-26 124.8 140 45.0
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.9e-25 122.1 213 36.6
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 1.0e-23 116.3 140 39.3
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 1.0e-23 116.3 163 33.7
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 6.8e-20 103.6 153 39.2
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 1.2e-19 102.8 75 64.0
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 3.2e-17 94.7 91 52.7
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 6.6e-15 87.0 106 38.7
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.1e-14 86.3 92 48.9
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.1e-14 86.3 87 43.7
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.5e-14 85.1 97 41.2
Peaxi162Scf00205g01111 Petunia axillaris HOM05D007426 ORTHO05D009167 4.2e-09 67.8 46 67.4
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 4.2e-09 67.8 163 33.1
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 1.6e-08 65.9 163 32.5
Os12g0152600 Oryza sativa ssp. japonica HOM05D025020 ORTHO05D009167 2.1e-08 65.5 162 33.3
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 1.3e-07 62.8 160 31.9
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 1.7e-07 62.4 179 23.5
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 2.3e-07 62.0 134 26.1
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 5.1e-07 60.8 145 27.6
Zm00001eb197020 Zea mays HOM05D025020 ORTHO05D009167 8.7e-07 60.1 162 29.0
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 1.1e-06 59.7 156 26.9
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 1.5e-06 59.3 172 25.6
ATR0733G078 Amborella trichopoda HOM05D007639 ORTHO05D009509 3.3e-06 58.2 137 24.1
ATR1076G001 Amborella trichopoda HOM05D007426 ORTHO05D009167 4.3e-06 57.8 46 58.7
Ca_11091_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 5.6e-06 57.4 155 24.5
ATR0326G024 Amborella trichopoda HOM05D000424 ORTHO05D000355 9.6e-06 56.6 245 22.0


User provided reference genes

Program Settings