Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 3.6e-123 444.9 221 100.0
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 4.4e-28 129.0 126 61.9
Migut.D00066 Erythranthe guttata HOM05D000397 ORTHO05D000492 1.2e-17 94.4 68 64.7
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 2.7e-17 93.2 133 47.4
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 4.3e-15 85.9 109 51.4
Oeu031894.1 Olea europaea HOM05D000397 ORTHO05D000492 2.8e-14 83.2 76 53.9
Nitab4.5_0000222g0030 Nicotiana tabacum HOM05D000397 ORTHO05D000492 4.0e-13 79.3 64 56.2
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 8.9e-13 78.2 86 52.3
Solyc01g079290.1 Solanum lycopersicum HOM05D000397 ORTHO05D000492 1.2e-12 77.8 64 56.2
Sopen01g031060 Solanum pennellii HOM05D000397 ORTHO05D000492 1.2e-12 77.8 64 56.2
Nitab4.5_0006503g0020 Nicotiana tabacum HOM05D000397 ORTHO05D000492 1.5e-12 77.4 64 54.7
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.5e-12 77.4 120 44.2
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.5e-12 77.4 120 44.2
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 2.6e-12 76.6 120 45.0
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 3.4e-12 76.3 120 43.3
CAN.G293.17 Capsicum annuum HOM05D000397 ORTHO05D000492 4.4e-12 75.9 63 54.0
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 7.6e-12 75.1 105 46.7
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.2e-11 73.6 127 44.9
PGSC0003DMG400009018 Solanum tuberosum HOM05D000397 ORTHO05D000492 2.2e-11 73.6 71 49.3
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 2.9e-11 73.2 62 59.7
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 4.9e-11 72.4 73 54.8
COL.COLO4_16840 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.4e-11 72.0 65 49.2
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 6.4e-11 72.0 78 56.4
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 6.4e-11 72.0 128 39.8
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 1.1e-10 71.2 126 41.3
Hma1.2p1_0486F.1_g163480 Hydrangea macrophylla HOM05D000397 ORTHO05D000492 1.1e-10 71.2 64 48.4
RcHm_v2.0_Chr3g0487241 Rosa chinensis HOM05D000397 ORTHO05D000492 1.1e-10 71.2 63 49.2
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.4e-10 70.9 110 44.5
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.9e-10 70.5 99 43.4
Peaxi162Scf00770g00002 Petunia axillaris HOM05D000397 ORTHO05D000492 3.2e-10 69.7 64 51.6
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 4.1e-10 69.3 61 63.9
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 4.1e-10 69.3 74 52.7
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 4.1e-10 69.3 113 44.2
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 5.4e-10 68.9 91 47.3
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 5.4e-10 68.9 63 55.6
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 5.4e-10 68.9 132 37.9
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 9.2e-10 68.2 64 53.1
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.2e-09 67.8 73 46.6
Actinidia21386 Actinidia chinensis HOM05D000397 ORTHO05D000492 1.6e-09 67.4 65 50.8
MD17G1277900 Malus domestica HOM05D000397 ORTHO05D000492 1.6e-09 67.4 63 49.2
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 1.6e-09 67.4 69 53.6
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 2.1e-09 67.0 102 44.1
vmacro02390 Vaccinium macrocarpon HOM05D000397 ORTHO05D000492 2.1e-09 67.0 64 46.9
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 2.7e-09 66.6 63 57.1
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 4.6e-09 65.9 107 41.1
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.0e-09 65.5 74 50.0
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.0e-09 65.5 128 41.4
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 7.8e-09 65.1 116 40.5
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 1.3e-08 64.3 91 46.2
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 1.7e-08 63.9 55 56.4
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 1.7e-08 63.9 139 33.8
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.7e-08 63.9 99 40.4
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 2.3e-08 63.5 97 42.3
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 2.3e-08 63.5 98 45.9
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 3.0e-08 63.2 63 49.2
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.0e-08 63.2 63 49.2
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 5.1e-08 62.4 114 42.1
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 6.6e-08 62.0 96 38.5
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 6.6e-08 62.0 112 35.7
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 6.6e-08 62.0 87 47.1
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 8.6e-08 61.6 86 45.3
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 8.6e-08 61.6 67 49.3
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 8.6e-08 61.6 99 39.4
COL.COLO4_14628 Corchorus olitorius HOM05D000397 ORTHO05D000492 1.1e-07 61.2 65 43.1
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.1e-07 61.2 76 44.7
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.1e-07 61.2 112 40.2
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.1e-07 61.2 112 40.2
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.1e-07 61.2 112 40.2
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.5e-07 60.8 63 47.6
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 1.5e-07 60.8 70 47.1
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 1.5e-07 60.8 112 33.0
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 1.9e-07 60.5 104 39.4
FAN23G1292 Fragaria x ananassa HOM05D000397 ORTHO05D000492 2.5e-07 60.1 62 48.4
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 2.5e-07 60.1 93 43.0
CARHR087310 Cardamine hirsuta HOM05D010701 ORTHO05D012784 3.3e-07 59.7 136 32.4
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 3.3e-07 59.7 56 58.9
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 3.3e-07 59.7 56 58.9
Rhsim13G0003600 Rhododendron simsii HOM05D000397 ORTHO05D000492 3.3e-07 59.7 64 46.9
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 4.3e-07 59.3 160 35.0
Atru.chr5.967 Acer truncatum HOM05D000397 ORTHO05D000492 5.6e-07 58.9 64 45.3
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 7.3e-07 58.5 99 38.4
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 7.3e-07 58.5 63 46.0
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 7.3e-07 58.5 69 46.4
Potri.013G108500 Populus trichocarpa HOM05D000397 ORTHO05D000492 7.3e-07 58.5 65 44.6
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 9.6e-07 58.2 73 47.9
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 1.2e-06 57.8 53 54.7
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 1.2e-06 57.8 65 52.3
A03p37790 Brassica napus HOM05D010701 ORTHO05D012784 1.6e-06 57.4 64 42.2
BraA03t12934Z Brassica rapa HOM05D010701 ORTHO05D012784 1.6e-06 57.4 64 42.2
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 1.6e-06 57.4 76 47.4
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 1.6e-06 57.4 67 52.2
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.6e-06 57.4 72 45.8
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 2.1e-06 57.0 55 54.5
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 2.1e-06 57.0 55 52.7
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 2.1e-06 57.0 55 54.5
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 2.1e-06 57.0 55 54.5
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 2.1e-06 57.0 63 47.6
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.1e-06 57.0 70 47.1
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 2.8e-06 56.6 55 50.9
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.8e-06 56.6 67 50.7
FAN28G2148 Fragaria x ananassa HOM05D005236 ORTHO05D006557 2.8e-06 56.6 52 55.8
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 2.8e-06 56.6 80 46.2
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 3.6e-06 56.2 75 44.0
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 3.6e-06 56.2 71 46.5
BcaB04g18718 Brassica carinata HOM05D010701 ORTHO05D012784 3.6e-06 56.2 64 43.8
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 3.6e-06 56.2 65 47.7
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 4.7e-06 55.8 55 52.7
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 4.7e-06 55.8 55 50.9
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 4.7e-06 55.8 55 50.9
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 4.7e-06 55.8 81 42.0
Sp3g10940 Schrenkiella parvula HOM05D010701 ORTHO05D012784 4.7e-06 55.8 113 31.0
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 6.2e-06 55.5 55 50.9
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 6.2e-06 55.5 93 43.0


User provided reference genes

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