Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold373G50193 Striga asiatica HOM05D003003 ORTHO05D008343 2.3e-102 375.6 184 100.0
SGA_v2.0_scaffold2144G54083 Striga asiatica HOM05D003003 ORTHO05D008343 3.6e-84 315.1 157 100.0
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 2.6e-58 229.2 247 52.6
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 5.6e-53 211.5 236 50.4
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 6.2e-52 208.0 220 50.0
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 4.0e-51 205.3 214 52.3
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 5.3e-51 204.9 227 48.5
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 2.0e-50 203.0 221 49.8
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 3.4e-50 202.2 220 49.1
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 3.4e-50 202.2 221 49.3
FAN05G1701 Fragaria x ananassa HOM05D003003 ORTHO05D008343 5.8e-50 201.4 189 55.0
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 1.7e-49 199.9 209 50.7
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 4.9e-49 198.4 243 47.3
MSTRG.18930 Avicennia marina HOM05D003003 ORTHO05D008343 8.4e-49 197.6 158 67.1
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 1.1e-48 197.2 210 51.9
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 1.4e-48 196.8 223 48.0
FAN02G2939 Fragaria x ananassa HOM05D003003 ORTHO05D008343 2.4e-48 196.1 189 54.5
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 4.2e-48 195.3 235 46.8
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 9.3e-48 194.1 229 48.0
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 1.2e-47 193.7 220 47.7
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 2.1e-47 193.0 206 50.0
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 2.7e-47 192.6 227 47.6
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 4.6e-47 191.8 221 48.9
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 4.6e-47 191.8 221 48.9
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 4.6e-47 191.8 221 48.9
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 6.0e-47 191.4 215 48.4
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 6.0e-47 191.4 215 48.4
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 6.0e-47 191.4 226 47.8
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 6.0e-47 191.4 205 50.2
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 7.9e-47 191.0 207 49.8
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 1.0e-46 190.7 221 47.5
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 1.0e-46 190.7 226 48.2
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 1.0e-46 190.7 226 48.2
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.0e-46 189.1 224 48.7
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 8.7e-46 187.6 210 49.0
Hma1.2p1_0174F.1_g076690 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 8.7e-46 187.6 152 64.5
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 8.7e-46 187.6 205 48.8
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 2.5e-45 186.0 234 44.9
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 3.3e-45 185.7 217 47.0
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 4.3e-45 185.3 214 46.7
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 1.3e-44 183.7 212 50.5
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 2.1e-44 183.0 216 46.3
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 8.1e-44 181.0 236 44.1
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 2.4e-43 179.5 206 47.1
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 4.0e-43 178.7 230 44.8
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 2.6e-42 176.0 211 48.3
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 3.4e-42 175.6 212 47.2
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 3.4e-42 175.6 226 45.6
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 3.4e-42 175.6 216 45.8
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 4.5e-42 175.3 228 44.3
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 5.8e-42 174.9 203 46.3
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 1.0e-41 174.1 232 46.1
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 1.3e-41 173.7 218 45.4
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 1.3e-41 173.7 217 45.2
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 1.7e-41 173.3 217 44.7
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 2.9e-41 172.6 238 44.5
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 4.9e-41 171.8 248 44.0
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 1.1e-40 170.6 237 43.9
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 1.1e-40 170.6 229 44.1
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 3.2e-40 169.1 228 43.4
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 4.2e-40 168.7 237 44.3
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 4.2e-40 168.7 237 44.3
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 4.2e-40 168.7 237 44.3
QL07p031297 Quercus lobata HOM05D003003 ORTHO05D008343 5.5e-40 168.3 141 61.7
RcHm_v2.0_Chr3g0460061 Rosa chinensis HOM05D003003 ORTHO05D008343 5.5e-40 168.3 164 57.9
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 1.2e-39 167.2 244 39.8
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 3.5e-39 165.6 189 48.7
Actinidia11485 Actinidia chinensis HOM05D000166 ORTHO05D001348 4.6e-39 165.2 218 43.6
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 4.6e-39 165.2 193 47.2
Cfa017002 Carpinus fangiana HOM05D003003 ORTHO05D008343 6.0e-39 164.9 133 59.4
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 7.9e-39 164.5 186 50.5
PSO017G2464 Papaver somniferum HOM05D003003 ORTHO05D008343 1.3e-38 163.7 223 41.7
Aqoxy4G03302 Aquilegia oxysepala HOM05D003003 ORTHO05D008343 1.8e-38 163.3 206 42.2
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 1.8e-38 163.3 186 47.3
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 1.8e-38 163.3 212 44.8
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 2.3e-38 162.9 231 41.1
Sc22g0001890 Simmondsia chinensis HOM05D003003 ORTHO05D008343 3.0e-38 162.5 114 67.5
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 3.9e-38 162.2 215 43.7
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 3.9e-38 162.2 206 45.1
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 3.9e-38 162.2 223 41.7
Zm00001eb290780 Zea mays HOM05D003003 ORTHO05D008343 5.1e-38 161.8 205 42.9
TWI74G0515 Tripterygium wilfordii HOM05D003003 ORTHO05D008343 6.7e-38 161.4 124 68.5
TAR633G0041 Trochodendron aralioides HOM05D003003 ORTHO05D008343 1.1e-37 160.6 120 63.3
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 9.6e-37 157.5 185 47.6
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 3.7e-36 155.6 238 41.2
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 3.7e-36 155.6 238 41.2
Psat3g117440 Pisum sativum HOM05D003003 ORTHO05D008343 6.2e-36 154.8 139 59.0
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 1.8e-35 153.3 171 48.5
Sed0015775 Sechium edule HOM05D003003 ORTHO05D008343 1.8e-35 153.3 137 56.2
Thhalv10008400m.g Eutrema salsugineum HOM05D003003 ORTHO05D008343 2.4e-35 152.9 123 65.0
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 3.1e-35 152.5 236 41.5
Lj1g0016212 Lotus japonicus HOM05D003003 ORTHO05D008343 5.3e-35 151.8 128 61.7
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 2.6e-34 149.4 192 41.7
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 4.5e-34 148.7 176 48.3
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 6.5e-33 144.8 166 47.0
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 2.5e-32 142.9 216 36.6
Os05g0481000 Oryza sativa ssp. japonica HOM05D003003 ORTHO05D008343 7.2e-32 141.4 148 53.4
HPP92_019756 Vanilla planifolia HOM05D003003 ORTHO05D008343 3.9e-30 135.6 115 59.1
MD04G1177200 Malus domestica HOM05D003003 ORTHO05D008343 3.3e-29 132.5 127 55.9
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 7.4e-29 131.3 158 46.2
CBR_g38036 Chara braunii HOM05D003003 ORTHO05D008343 6.3e-28 128.3 223 34.5
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 8.2e-28 127.9 213 37.1
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 1.4e-27 127.1 228 36.0
Pp3c11_26820 Physcomitrium patens HOM05D003003 ORTHO05D008343 7.7e-26 121.3 202 38.1
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.7e-25 120.2 225 36.0
SMO336G0035 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 6.5e-25 118.2 222 32.9
MELO3C025253.2 Cucumis melo HOM05D003003 ORTHO05D008343 3.2e-24 115.9 71 76.1
Cpa.g.sc72.27 Carica papaya HOM05D003003 ORTHO05D008343 1.2e-23 114.0 127 48.0
AagrBONN_evm.TU.Sc2ySwM_368.2754 Anthoceros agrestis HOM05D003003 ORTHO05D008343 7.9e-23 111.3 129 45.0
CSS0024099 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 3.9e-22 109.0 80 66.2
Rhsim09G0022100 Rhododendron simsii HOM05D003003 ORTHO05D008343 6.7e-22 108.2 124 48.4
Rhsim04G0150500 Rhododendron simsii HOM05D003003 ORTHO05D008343 9.7e-21 104.4 201 35.8
FAN14G0728 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.0e-14 82.8 61 62.3
PRCOL_00004485 Prasinoderma coloniale HOM05D003003 ORTHO05D008343 3.0e-14 82.8 62 56.5
FAN09G1188 Fragaria x ananassa HOM05D003003 ORTHO05D008343 2.0e-13 80.1 73 56.2
MCO12G079 Micromonas commoda HOM05D003003 ORTHO05D008343 5.7e-13 78.6 62 54.8
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 2.1e-07 60.1 28 82.1
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.1e-07 60.1 26 88.5
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 1.0e-06 57.8 26 84.6
HPP92_019757 Vanilla planifolia HOM05D003003 ORTHO05D008343 1.4e-06 57.4 28 82.1
Cre17.g739426 Chlamydomonas reinhardtii HOM05D003003 ORTHO05D008343 8.8e-06 54.7 28 71.4


User provided reference genes

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