Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14544 Striga asiatica HOM05D002495 ORTHO05D002704 1.7e-85 319.3 159 100.0
SGA_v2.0_scaffold135G34836 Striga asiatica HOM05D002495 ORTHO05D002704 2.0e-30 136.3 107 63.6
SGA_v2.0_scaffold47G17690 Striga asiatica HOM05D002495 ORTHO05D404293 2.1e-24 116.3 67 86.6
MSTRG.3194 Avicennia marina HOM05D002495 ORTHO05D002704 7.6e-22 107.8 91 59.3
Actinidia33974 Actinidia chinensis HOM05D002495 ORTHO05D002704 1.7e-21 106.7 105 50.5
Lju41A30T63 Lonicera japonica HOM05D002495 ORTHO05D002704 1.9e-20 103.2 90 53.3
QL02p078161 Quercus lobata HOM05D002495 ORTHO05D002704 2.4e-20 102.8 109 50.5
CSS0007179 Camellia sinensis var. sinensis HOM05D002495 ORTHO05D002704 4.2e-20 102.1 112 48.2
QL93p0205_0152 Quercus lobata HOM05D002495 ORTHO05D002704 7.1e-20 101.3 109 49.5
Nitab4.5_0001952g0160 Nicotiana tabacum HOM05D002495 ORTHO05D002704 9.3e-20 100.9 89 51.7
Nitab4.5_0007185g0030 Nicotiana tabacum HOM05D002495 ORTHO05D002704 2.7e-19 99.4 115 42.6
SalBow1G4658 Salvia bowleyana HOM05D002495 ORTHO05D002704 3.5e-19 99.0 84 59.5
Hma1.2p1_0697F.1_g205040 Hydrangea macrophylla HOM05D002495 ORTHO05D002704 7.8e-19 97.8 90 54.4
Hma1.2p1_1975F.1_g309730 Hydrangea macrophylla HOM05D002495 ORTHO05D002704 1.0e-18 97.4 90 54.4
Oeu060605.1 Olea europaea HOM05D002495 ORTHO05D002704 1.0e-18 97.4 90 54.4
Migut.H00156 Erythranthe guttata HOM05D002495 ORTHO05D002704 1.3e-18 97.1 95 52.6
Peaxi162Scf00129g00085 Petunia axillaris HOM05D002495 ORTHO05D002704 1.3e-18 97.1 93 46.2
TWI12G0639 Tripterygium wilfordii HOM05D002495 ORTHO05D002704 3.0e-18 95.9 107 46.7
CiPaw.03G034400 Carya illinoinensis HOM05D002495 ORTHO05D002704 3.9e-18 95.5 90 54.4
MELO3C009923.2 Cucumis melo HOM05D002495 ORTHO05D002704 5.1e-18 95.1 96 52.1
Thecc.04G003400 Theobroma cacao HOM05D002495 ORTHO05D002704 6.6e-18 94.7 96 50.0
ClCG10G014550 Citrullus lanatus HOM05D002495 ORTHO05D002704 8.7e-18 94.4 96 51.0
Sabra11G0124100 Salix brachista HOM05D002495 ORTHO05D002704 1.1e-17 94.0 96 50.0
SalBow1G0826 Salvia bowleyana HOM05D002495 ORTHO05D002704 1.1e-17 94.0 71 63.4
Cc07_g02610 Coffea canephora HOM05D002495 ORTHO05D002704 1.5e-17 93.6 95 49.5
FvH4_6g50080 Fragaria vesca HOM05D002495 ORTHO05D002704 1.5e-17 93.6 95 50.5
Haze_14627 Corylus avellana HOM05D002495 ORTHO05D002704 1.9e-17 93.2 91 51.6
Cfa007470 Carpinus fangiana HOM05D002495 ORTHO05D002704 2.5e-17 92.8 91 50.5
FAN02G0801 Fragaria x ananassa HOM05D002495 ORTHO05D002704 2.5e-17 92.8 95 50.5
FAN09G1530 Fragaria x ananassa HOM05D002495 ORTHO05D002704 2.5e-17 92.8 95 50.5
Glyma.19G013700 Glycine max HOM05D002495 ORTHO05D002704 2.5e-17 92.8 85 51.8
Gohir.D07G224800 Gossypium hirsutum HOM05D002495 ORTHO05D002704 2.5e-17 92.8 92 50.0
Gorai.001G259200 Gossypium raimondii HOM05D002495 ORTHO05D002704 2.5e-17 92.8 92 50.0
Rhsim08G0061400 Rhododendron simsii HOM05D002495 ORTHO05D002704 2.5e-17 92.8 89 50.6
Dinv35021 Davidia involucrata HOM05D002495 ORTHO05D002704 3.3e-17 92.4 108 51.9
FAN14G1894 Fragaria x ananassa HOM05D002495 ORTHO05D002704 3.3e-17 92.4 95 50.5
Medtr6g008210 Medicago truncatula HOM05D002495 ORTHO05D002704 3.3e-17 92.4 108 42.6
COL.COLO4_06151 Corchorus olitorius HOM05D002495 ORTHO05D002704 4.3e-17 92.0 93 48.4
CsaV3_3G042030 Cucumis sativus L. HOM05D002495 ORTHO05D002704 4.3e-17 92.0 93 54.8
FAN05G0559 Fragaria x ananassa HOM05D002495 ORTHO05D002704 4.3e-17 92.0 109 46.8
MD17G1040300 Malus domestica HOM05D002495 ORTHO05D002704 4.3e-17 92.0 96 51.0
Duzib264G0073 Durio zibethinus HOM05D002495 ORTHO05D002704 7.3e-17 91.3 100 48.0
PGR142G1940 Punica granatum HOM05D002495 ORTHO05D002704 7.3e-17 91.3 112 47.3
vmacro18228 Vaccinium macrocarpon HOM05D002495 ORTHO05D002704 9.6e-17 90.9 96 47.9
GSVIVG01032538001 Vitis vinifera HOM05D002495 ORTHO05D002704 1.3e-16 90.5 105 47.6
Gohir.A07G217700 Gossypium hirsutum HOM05D002495 ORTHO05D002704 1.6e-16 90.1 92 46.7
DCAR_013982 Daucus carota HOM05D002495 ORTHO05D002704 2.1e-16 89.7 114 43.9
Prupe.3G278700 Prunus persica HOM05D002495 ORTHO05D002704 2.1e-16 89.7 112 45.5
Rhsim08G0057200 Rhododendron simsii HOM05D002495 ORTHO05D002704 2.1e-16 89.7 89 49.4
Sed0000928 Sechium edule HOM05D002495 ORTHO05D002704 2.1e-16 89.7 95 49.5
CAN.G206.58 Capsicum annuum HOM05D002495 ORTHO05D002704 2.8e-16 89.4 91 49.5
Glyma.13G069200 Glycine max HOM05D002495 ORTHO05D002704 4.8e-16 88.6 97 47.4
Manes.15G180600 Manihot esculenta HOM05D002495 ORTHO05D002704 4.8e-16 88.6 121 43.0
Hund20035 Selenicereus undatus HOM05D002495 ORTHO05D002704 4.8e-16 88.6 107 46.7
Ciclev10012852m.g Citrus clementina HOM05D002495 ORTHO05D002704 6.2e-16 88.2 111 43.2
Thhalv10004977m.g Eutrema salsugineum HOM05D002495 ORTHO05D002704 8.1e-16 87.8 90 51.1
PGSC0003DMG400000512 Solanum tuberosum HOM05D002495 ORTHO05D002704 8.1e-16 87.8 89 48.3
TPR.G31463 Trifolium pratense HOM05D002495 ORTHO05D002704 8.1e-16 87.8 109 42.2
VMungo0464G1545 Vigna mungo HOM05D002495 ORTHO05D002704 8.1e-16 87.8 97 44.3
Cpa.g.sc14.84 Carica papaya HOM05D002495 ORTHO05D002704 1.1e-15 87.4 107 44.9
Ca_04226_v3 Cicer arietinum L. HOM05D002495 ORTHO05D002704 1.4e-15 87.0 109 41.3
RcHm_v2.0_Chr2g0170351 Rosa chinensis HOM05D002495 ORTHO05D002704 2.4e-15 86.3 95 48.4
Atru.chr8.2416 Acer truncatum HOM05D002495 ORTHO05D002704 4.0e-15 85.5 109 41.3
Sopen02g031950 Solanum pennellii HOM05D002495 ORTHO05D002704 4.0e-15 85.5 91 44.0
arahy.Tifrunner.gnm1.ann1.XE45GC Arachis hypogaea HOM05D002495 ORTHO05D002704 9.0e-15 84.3 112 41.1
Aa31LG2G4700 Aethionema arabicum HOM05D002495 ORTHO05D002704 1.2e-14 84.0 96 46.9
Carub.0005s0671 Capsella rubella HOM05D002495 ORTHO05D002704 1.2e-14 84.0 90 51.1
Eucgr.I01876 Eucalyptus grandis HOM05D002495 ORTHO05D002704 1.2e-14 84.0 67 58.2
Psat1g079520 Pisum sativum HOM05D002495 ORTHO05D002704 1.2e-14 84.0 109 41.3
Sp2g17110 Schrenkiella parvula HOM05D002495 ORTHO05D002704 1.2e-14 84.0 89 49.4
BcaC06g30926 Brassica carinata HOM05D002495 ORTHO05D002704 1.5e-14 83.6 90 51.1
MBI14_g12777_MAGBIO Magnolia biondii HOM05D002495 ORTHO05D002704 1.5e-14 83.6 93 47.3
Solyc02g087210.3 Solanum lycopersicum HOM05D002495 ORTHO05D002704 2.0e-14 83.2 90 46.7
arahy.Tifrunner.gnm1.ann1.TLYY08 Arachis hypogaea HOM05D002495 ORTHO05D002704 2.6e-14 82.8 118 39.8
A06p40630 Brassica napus HOM05D002495 ORTHO05D002704 2.6e-14 82.8 90 51.1
BraA06t26982Z Brassica rapa HOM05D002495 ORTHO05D002704 2.6e-14 82.8 90 51.1
CARHR149860 Cardamine hirsuta HOM05D002495 ORTHO05D002704 2.6e-14 82.8 91 48.4
HPP92_017345 Vanilla planifolia HOM05D002495 ORTHO05D002704 2.6e-14 82.8 87 48.3
BcaC06g33747 Brassica carinata HOM05D002495 ORTHO05D002704 3.4e-14 82.4 90 51.1
C07p37370 Brassica napus HOM05D002495 ORTHO05D002704 3.4e-14 82.4 90 51.1
BolC7t44246H Brassica oleracea HOM05D002495 ORTHO05D002704 3.4e-14 82.4 90 51.1
Nn4g22911 Nelumbo nucifera HOM05D002495 ORTHO05D002704 3.4e-14 82.4 94 45.7
AL5G17700 Arabidopsis lyrata HOM05D002495 ORTHO05D002704 7.6e-14 81.3 111 42.3
MD09G1039300 Malus domestica HOM05D002495 ORTHO05D002704 7.6e-14 81.3 96 44.8
AT3G28210 Arabidopsis thaliana HOM05D002495 ORTHO05D002704 9.9e-14 80.9 100 46.0
Lsat_1_v5_gn_4_180681 Lactuca sativa HOM05D002495 ORTHO05D002704 9.9e-14 80.9 111 42.3
THA.LOC104805418 Tarenaya hassleriana HOM05D002495 ORTHO05D002704 9.9e-14 80.9 103 45.6
Aqoxy3G03105 Aquilegia oxysepala HOM05D002495 ORTHO05D002704 1.3e-13 80.5 93 46.2
AUR62032081 Chenopodium quinoa HOM05D002495 ORTHO05D002704 1.3e-13 80.5 115 42.6
Phvul.004G020300 Phaseolus vulgaris HOM05D002495 ORTHO05D002704 1.3e-13 80.5 63 55.6
Lj2g0008756 Lotus japonicus HOM05D002495 ORTHO05D002704 1.7e-13 80.1 108 43.5
Lalb_Chr21g0319271 Lupinus albus HOM05D002495 ORTHO05D002704 2.9e-13 79.3 97 40.2
Duzib147G1487 Durio zibethinus HOM05D002495 ORTHO05D002704 1.1e-12 77.4 114 40.4
ECA232G0623 Erigeron canadensis HOM05D002495 ORTHO05D002704 1.1e-12 77.4 94 44.7
HanXRQChr03g0089931 Helianthus annuus HOM05D002495 ORTHO05D002704 1.1e-12 77.4 96 45.8
EL10Ac2g03386 Beta vulgaris HOM05D002495 ORTHO05D002704 1.4e-12 77.0 96 44.8
Potri.011G138500 Populus trichocarpa HOM05D002495 ORTHO05D002704 1.9e-12 76.6 67 55.2
Ah.16g106990 Amaranthus hybridus HOM05D002495 ORTHO05D002704 9.3e-12 74.3 89 42.7
CDE06G1068 Ceratophyllum demersum HOM05D002495 ORTHO05D002704 1.6e-11 73.6 92 38.0
Zm00001eb099020 Zea mays HOM05D002495 ORTHO05D002704 1.7e-10 70.1 70 47.1
Os09g0385700 Oryza sativa ssp. japonica HOM05D002495 ORTHO05D002704 3.0e-10 69.3 63 49.2
Phvul.004G020400 Phaseolus vulgaris HOM05D002495 ORTHO05D002704 3.9e-10 68.9 64 48.4
Nn5g27586 Nelumbo nucifera HOM05D002495 ORTHO05D002106 8.7e-10 67.8 75 45.3
AUR62041854 Chenopodium quinoa HOM05D002495 ORTHO05D002704 1.3e-08 63.9 97 39.2
TAR629G1987 Trochodendron aralioides HOM05D002495 ORTHO05D002704 8.1e-08 61.2 71 46.5
PSO832G3305 Papaver somniferum HOM05D002495 ORTHO05D002704 6.9e-07 58.2 74 40.5
Pp3c8_230 Physcomitrium patens HOM05D002495 ORTHO05D002704 1.5e-06 57.0 91 34.1
CBR_g34967 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-06 56.6 81 39.5
Gohir.A01G196800 Gossypium hirsutum HOM05D002495 ORTHO05D002704 4.5e-06 55.5 84 42.9
Nitab4.5_0000733g0090 Nicotiana tabacum HOM05D002495 ORTHO05D002704 5.8e-06 55.1 56 51.8
C08p33020 Brassica napus HOM05D002495 ORTHO05D002704 7.6e-06 54.7 60 48.3
Pp3c8_25400 Physcomitrium patens HOM05D002495 ORTHO05D002704 7.6e-06 54.7 91 33.0
CDE05G3061 Ceratophyllum demersum HOM05D002495 ORTHO05D002704 9.9e-06 54.3 51 47.1


User provided reference genes

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