Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.4e-156 556.2 283 100.0
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.3e-101 373.6 303 67.3
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 5.6e-84 315.1 314 58.0
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.1e-83 313.2 321 58.3
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 6.1e-83 311.6 327 54.4
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.4e-79 300.4 281 58.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 4.7e-59 232.3 313 47.6
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.2e-59 231.9 313 47.6
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 2.6e-57 226.5 313 44.7
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.9e-56 223.0 317 43.5
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 6.4e-56 221.9 310 45.5
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.9e-55 220.3 318 42.8
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.2e-54 217.6 342 46.2
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 4.7e-51 205.7 299 46.5
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.5e-49 200.7 298 44.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 7.8e-46 188.3 319 39.5
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.3e-45 187.6 323 41.2
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-45 187.2 320 40.3
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-45 187.2 320 39.7
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.1e-43 180.3 331 39.3
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.8e-43 179.9 294 40.1
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 6.2e-43 178.7 328 40.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 8.1e-43 178.3 321 39.6
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-42 177.9 322 41.0
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.1e-42 176.4 321 41.1
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.0e-42 174.9 323 39.6
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.2e-41 174.5 316 38.6
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.5e-41 174.1 288 41.7
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.4e-41 172.9 322 41.0
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.4e-41 172.9 271 45.0
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 5.8e-41 172.2 311 38.6
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.7e-40 170.6 323 39.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.4e-40 168.7 274 41.6
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 6.4e-40 168.7 328 40.5
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-39 167.9 323 36.8
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.4e-39 167.5 322 39.4
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.4e-39 167.5 313 39.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.9e-39 167.2 288 38.9
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.1e-39 165.2 322 39.8
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 9.3e-39 164.9 322 39.8
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-38 164.5 322 39.8
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.6e-38 164.1 289 38.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 3.5e-38 162.9 309 40.5
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 4.6e-38 162.5 345 38.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.6e-38 162.5 323 38.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 6.0e-38 162.2 322 36.3
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 6.0e-38 162.2 314 41.4
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.0e-37 161.4 329 39.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.3e-37 161.0 322 38.8
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.0e-37 159.8 303 35.0
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 8.7e-37 158.3 310 39.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.9e-36 157.1 317 38.8
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 3.3e-36 156.4 299 39.5
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.3e-36 156.0 314 36.3
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 5.6e-36 155.6 335 36.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.3e-35 154.5 331 39.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 4.8e-35 152.5 248 42.3
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.8e-35 152.5 318 37.7
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.1e-34 151.4 301 34.9
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 6.9e-34 148.7 293 36.2
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 9.0e-34 148.3 305 38.0
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.5e-33 146.0 309 34.0
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 5.8e-33 145.6 309 34.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 7.6e-33 145.2 312 36.2
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.9e-32 143.3 313 35.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.9e-32 143.3 312 37.5
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 3.8e-32 142.9 310 36.8
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 6.4e-32 142.1 310 37.7
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.1e-31 141.4 308 34.7
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.1e-31 141.4 326 35.0
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-31 141.0 315 37.8
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 3.2e-31 139.8 305 35.1
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 5.5e-31 139.0 227 38.3
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 7.1e-31 138.7 308 34.1
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 2.7e-30 136.7 300 35.7
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 3.5e-30 136.3 308 34.7
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 3.5e-30 136.3 308 34.7
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.6e-30 136.0 308 34.7
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.6e-30 136.0 308 34.7
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-30 135.6 310 33.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 6.0e-30 135.6 305 34.4
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.0e-29 134.8 309 34.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.3e-29 134.4 309 35.3
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 2.3e-29 133.7 259 39.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.3e-29 133.7 306 36.3
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.0e-29 133.3 306 36.9
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 3.0e-29 133.3 309 34.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 5.1e-29 132.5 310 31.6
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.7e-29 132.1 306 35.6
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.1e-28 131.3 310 33.5
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.1e-28 131.3 315 34.0
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.1e-28 131.3 289 34.9
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.5e-28 131.0 318 31.4
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 2.5e-28 130.2 301 35.9
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.3e-28 129.8 316 32.6
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 3.3e-28 129.8 310 35.5
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.6e-28 129.0 314 31.5
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 2.8e-27 126.7 315 32.4
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.2e-27 125.6 320 31.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 8.2e-27 125.2 317 35.0
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.4e-26 124.4 302 30.8
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-26 124.0 277 36.8
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.8e-26 124.0 302 33.4
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.1e-26 123.2 317 32.2
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.0e-26 122.9 320 30.6
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.5e-25 120.9 295 34.2
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 5.8e-25 119.0 299 33.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 7.6e-25 118.6 315 34.9
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.0e-24 118.2 285 35.8
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.3e-24 117.9 295 37.3
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.1e-23 114.8 296 30.7
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.9e-23 114.0 294 34.0
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.9e-23 114.0 191 39.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.5e-23 113.6 296 30.4
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.2e-23 113.2 282 34.0
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 4.2e-23 112.8 276 36.2
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 9.3e-23 111.7 311 30.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.2e-22 111.3 299 33.1
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-22 109.0 297 35.4
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-22 109.0 304 33.9
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.0e-22 109.0 304 33.9
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.0e-22 109.0 304 33.9
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.0e-21 108.2 298 34.2
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 5.7e-20 102.4 316 29.4
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 2.2e-19 100.5 327 30.0
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.8e-19 100.1 293 33.1
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.8e-19 99.4 310 31.6
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 4.1e-18 96.3 288 30.9
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.5e-17 94.4 286 28.0
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 2.0e-17 94.0 188 34.6
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.5e-17 92.8 296 29.1
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 5.9e-17 92.4 265 29.8
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 1.3e-16 91.3 253 34.4
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.8e-16 89.7 289 31.8
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.8e-16 89.7 290 29.7
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.8e-16 89.7 250 35.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.0e-16 89.4 295 27.1
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 5.0e-16 89.4 168 33.3
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.5e-15 85.9 139 38.8
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 9.4e-15 85.1 292 29.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.1e-14 84.0 142 36.6
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.6e-14 83.2 135 38.5
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.3e-13 80.5 281 29.5
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.5e-12 77.8 289 32.2
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 4.8e-11 72.8 252 27.4
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 6.3e-11 72.4 246 34.1
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.1e-10 71.6 242 32.6
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 5.3e-10 69.3 123 35.0
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.9e-07 60.8 176 31.8
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 2.5e-07 60.5 217 29.5
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.2e-07 59.7 205 35.1


User provided reference genes

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