Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 6.2e-152 540.8 280 100.0
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.4e-82 310.5 302 62.6
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 7.5e-57 224.9 334 42.8
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.7e-53 213.8 350 41.4
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.3e-53 213.4 350 42.9
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.9e-52 210.3 330 41.8
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.9e-52 210.3 331 41.4
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.6e-46 189.1 324 39.5
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.3e-45 187.6 352 37.5
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.6e-45 185.3 246 44.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.5e-44 183.3 305 41.3
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.3e-44 183.0 297 41.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 7.3e-44 181.8 297 41.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.1e-43 180.3 267 43.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.8e-43 179.9 328 41.8
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.8e-43 179.9 328 41.8
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.6e-43 179.5 224 48.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.4e-42 177.6 330 40.3
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.4e-42 177.6 229 46.7
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.2e-41 174.5 333 36.3
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.4e-41 172.9 261 44.4
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.4e-41 172.9 261 44.4
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 3.4e-41 172.9 265 40.8
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 9.8e-41 171.4 357 35.0
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.9e-40 169.1 387 33.6
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.9e-40 169.1 244 44.3
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 6.4e-40 168.7 394 32.7
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 3.2e-39 166.4 290 38.6
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.1e-39 166.0 203 45.3
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 9.2e-39 164.9 320 36.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.2e-38 164.5 375 34.7
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.0e-38 163.7 301 39.2
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.0e-38 163.7 181 47.5
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.7e-38 163.3 307 40.4
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 4.6e-38 162.5 192 49.5
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.9e-36 157.1 243 41.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 6.2e-35 152.1 250 42.4
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 8.1e-35 151.8 209 44.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.8e-34 150.6 215 44.7
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.1e-34 149.8 172 48.3
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 3.1e-34 149.8 226 44.7
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.7e-32 144.1 377 31.6
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 2.2e-32 143.7 225 42.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-32 143.7 225 42.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-32 143.7 225 42.2
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-32 143.7 225 42.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.9e-32 143.3 224 42.4
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.9e-32 143.3 266 39.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.9e-32 143.3 335 31.9
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 3.7e-32 142.9 320 34.7
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.9e-32 142.5 227 42.7
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 4.9e-32 142.5 230 40.9
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 8.3e-32 141.7 403 31.8
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.4e-31 141.0 329 34.7
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.4e-31 140.2 331 35.6
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-30 137.9 229 39.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.6e-30 137.5 352 33.8
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-30 137.5 336 32.7
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.7e-30 136.7 367 31.9
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 3.5e-30 136.3 290 35.5
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 3.5e-30 136.3 290 35.5
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.0e-30 135.6 179 43.6
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 7.8e-30 135.2 230 38.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.0e-29 134.8 192 42.2
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.3e-29 134.4 282 35.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-29 134.4 192 42.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.9e-29 132.9 210 40.5
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 5.1e-29 132.5 371 31.5
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 5.1e-29 132.5 172 43.6
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 6.6e-29 132.1 229 37.6
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 8.6e-29 131.7 350 33.4
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.9e-28 130.6 235 40.0
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.5e-28 130.2 263 36.1
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.3e-28 129.4 260 34.6
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 9.5e-28 128.3 273 37.0
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-27 127.5 265 35.8
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-27 127.5 265 35.8
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.6e-27 127.5 210 42.4
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-27 127.1 238 36.1
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.1e-27 127.1 274 34.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.8e-27 126.7 234 39.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.6e-27 126.3 243 38.7
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 4.7e-27 125.9 407 31.4
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 8.1e-27 125.2 297 34.7
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.1e-27 125.2 273 34.1
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.1e-27 125.2 192 40.6
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 3.1e-26 123.2 251 37.5
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 4.0e-26 122.9 231 39.0
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.2e-26 122.5 212 37.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.8e-26 122.1 188 42.6
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.8e-26 122.1 188 42.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 6.8e-26 122.1 372 29.6
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 8.9e-26 121.7 231 38.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 8.9e-26 121.7 231 39.0
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-25 121.3 341 33.7
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 2.0e-25 120.6 265 35.1
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 3.4e-25 119.8 192 39.6
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 4.4e-25 119.4 232 37.1
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 4.4e-25 119.4 232 37.1
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 4.4e-25 119.4 232 37.1
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.4e-25 119.4 337 33.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 9.9e-25 118.2 202 39.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 9.9e-25 118.2 195 37.4
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 9.9e-25 118.2 331 32.0
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 9.9e-25 118.2 331 32.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.9e-25 118.2 319 31.3
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 9.9e-25 118.2 319 31.3
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-24 117.5 229 38.0
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.7e-24 117.5 242 37.2
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.9e-24 116.7 244 36.9
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 3.7e-24 116.3 274 32.5
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 3.7e-24 116.3 121 55.4
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 4.9e-24 115.9 216 37.5
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-23 114.0 180 41.1
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.4e-23 113.6 223 37.2
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 4.1e-23 112.8 354 29.4
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 5.4e-23 112.5 321 32.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.2e-23 111.7 193 41.5
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 4.6e-22 109.4 362 30.4
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 6.0e-22 109.0 271 33.6
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 7.8e-22 108.6 372 30.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.3e-21 107.8 236 34.3
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 3.0e-21 106.7 362 29.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 5.1e-21 105.9 221 35.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 5.1e-21 105.9 254 33.5
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.6e-21 105.5 242 36.8
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 2.5e-20 103.6 228 34.6
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.5e-20 103.6 228 34.6
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.3e-20 103.2 274 32.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 5.6e-20 102.4 231 34.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-19 100.9 231 34.6
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-19 100.5 189 39.2
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 2.8e-19 100.1 235 34.5
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 2.8e-19 100.1 215 34.9
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.4e-18 97.8 240 32.5
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 5.2e-18 95.9 237 32.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.6e-17 93.6 139 41.7
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 4.4e-17 92.8 234 33.3
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.9e-15 87.4 215 34.9
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.2e-15 86.7 122 42.6
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-14 84.7 222 31.5
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.1e-14 84.0 260 30.8
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 6.6e-13 79.0 248 30.2
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 7.3e-12 75.5 198 31.3
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.3e-11 74.7 113 39.8
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 8.1e-11 72.0 232 30.6
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.3e-10 69.3 95 45.3
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.9e-10 68.9 94 43.6
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-09 68.2 236 30.1
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.6e-09 67.0 137 39.4
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 5.8e-09 65.9 242 29.3
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 7.6e-09 65.5 222 30.2
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.9e-08 62.8 93 41.9
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 7.9e-06 55.5 165 33.3


User provided reference genes

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