Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14504 Striga asiatica HOM05D003083 ORTHO05D003466 1.4e-119 433.0 215 100.0
Migut.L01127 Erythranthe guttata HOM05D003083 ORTHO05D003466 2.7e-14 83.2 37 97.3
Aqoxy3G00624 Aquilegia oxysepala HOM05D003083 ORTHO05D003466 3.5e-14 82.8 37 94.6
Peaxi162Scf00402g00512 Petunia axillaris HOM05D003083 ORTHO05D003466 7.9e-14 81.6 43 81.4
Nitab4.5_0000259g0240 Nicotiana tabacum HOM05D003083 ORTHO05D003466 1.8e-13 80.5 51 68.6
DCAR_026697 Daucus carota HOM05D003083 ORTHO05D003466 2.3e-13 80.1 37 91.9
MSTRG.2280 Avicennia marina HOM05D003083 ORTHO05D003466 5.1e-13 79.0 37 91.9
EL10Ac2g03699 Beta vulgaris HOM05D003083 ORTHO05D003466 5.1e-13 79.0 39 87.2
Migut.E00270 Erythranthe guttata HOM05D003083 ORTHO05D003466 5.1e-13 79.0 37 91.9
Ah.04g158170 Amaranthus hybridus HOM05D003083 ORTHO05D003466 1.1e-12 77.8 37 91.9
Potri.010G133800 Populus trichocarpa HOM05D003083 ORTHO05D003466 1.1e-12 77.8 39 82.1
CiPaw.06G097300 Carya illinoinensis HOM05D003083 ORTHO05D003466 1.5e-12 77.4 36 94.4
SGA_v2.0_scaffold14G06783 Striga asiatica HOM05D003083 ORTHO05D003466 1.5e-12 77.4 43 72.1
Aqoxy4G02735 Aquilegia oxysepala HOM05D003083 ORTHO05D003466 1.9e-12 77.0 37 83.8
A06p42730 Brassica napus HOM05D003083 ORTHO05D003466 1.9e-12 77.0 38 86.8
arahy.Tifrunner.gnm1.ann1.REV2BJ Arachis hypogaea HOM05D003083 ORTHO05D003466 2.5e-12 76.6 36 94.4
arahy.Tifrunner.gnm1.ann1.UA9SQ6 Arachis hypogaea HOM05D003083 ORTHO05D003466 2.5e-12 76.6 36 94.4
A06p09620 Brassica napus HOM05D003083 ORTHO05D003466 2.5e-12 76.6 38 86.8
CAN.G184.35 Capsicum annuum HOM05D003083 ORTHO05D003466 2.5e-12 76.6 37 89.2
Nitab4.5_0008828g0020 Nicotiana tabacum HOM05D003083 ORTHO05D003466 2.5e-12 76.6 37 89.2
Solyc05g010440.2 Solanum lycopersicum HOM05D003083 ORTHO05D003466 2.5e-12 76.6 37 89.2
PGSC0003DMG400007515 Solanum tuberosum HOM05D003083 ORTHO05D003466 2.5e-12 76.6 37 89.2
BcaB02g06450 Brassica carinata HOM05D003083 ORTHO05D003466 3.3e-12 76.3 38 86.8
C05p11330 Brassica napus HOM05D003083 ORTHO05D003466 3.3e-12 76.3 38 86.8
SalBow8G2854 Salvia bowleyana HOM05D003083 ORTHO05D003466 3.3e-12 76.3 37 86.5
SalBow8G2955 Salvia bowleyana HOM05D003083 ORTHO05D003466 3.3e-12 76.3 37 86.5
TWI79G0908 Tripterygium wilfordii HOM05D003083 ORTHO05D003466 3.3e-12 76.3 37 86.5
BcaC06g31132 Brassica carinata HOM05D003083 ORTHO05D003466 4.3e-12 75.9 36 91.7
BcaC06g33978 Brassica carinata HOM05D003083 ORTHO05D003466 4.3e-12 75.9 36 91.7
C07p34400 Brassica napus HOM05D003083 ORTHO05D003466 4.3e-12 75.9 36 91.7
BolC7t43968H Brassica oleracea HOM05D003083 ORTHO05D003466 4.3e-12 75.9 36 91.7
BraA06t27186Z Brassica rapa HOM05D003083 ORTHO05D003466 4.3e-12 75.9 36 91.7
Lj4g0001140 Lotus japonicus HOM05D003083 ORTHO05D003466 4.3e-12 75.9 36 88.9
Aa31LG2G6730 Aethionema arabicum HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
AL1G25300 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
AT1G13560 Arabidopsis thaliana HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
BcaC05g25248 Brassica carinata HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
BolC5t29882H Brassica oleracea HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
BraA06t24152Z Brassica rapa HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
Carub.0001s1324 Capsella rubella HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
CARHR013880 Cardamine hirsuta HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
Thhalv10004378m.g Eutrema salsugineum HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
FAN07G2348 Fragaria x ananassa HOM05D003083 ORTHO05D003466 5.6e-12 75.5 48 68.8
Oeu024129.1 Olea europaea HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
Phvul.001G209800 Phaseolus vulgaris HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
Phvul.003G044000 Phaseolus vulgaris HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
QL03p046635 Quercus lobata HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
Sp1g11950 Schrenkiella parvula HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
THA.LOC104805232 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 5.6e-12 75.5 36 91.7
TAR622G0202 Trochodendron aralioides HOM05D003083 ORTHO05D003466 5.6e-12 75.5 37 81.1
Ah.02g126680 Amaranthus hybridus HOM05D003083 ORTHO05D003466 7.4e-12 75.1 36 88.9
COL.COLO4_34869 Corchorus olitorius HOM05D003083 ORTHO05D003466 7.4e-12 75.1 37 83.8
Thhalv10007875m.g Eutrema salsugineum HOM05D003083 ORTHO05D003466 7.4e-12 75.1 36 88.9
Glyma.02G128300 Glycine max HOM05D003083 ORTHO05D003466 7.4e-12 75.1 36 91.7
Nn4g23623 Nelumbo nucifera HOM05D003083 ORTHO05D003466 7.4e-12 75.1 37 83.8
Psat1g085000 Pisum sativum HOM05D003083 ORTHO05D003466 7.4e-12 75.1 36 88.9
QL11p007130 Quercus lobata HOM05D003083 ORTHO05D003466 7.4e-12 75.1 36 91.7
Sp2g14850 Schrenkiella parvula HOM05D003083 ORTHO05D003466 7.4e-12 75.1 36 88.9
CSS0020278 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 1.3e-11 74.3 36 91.7
CSS0033249 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 1.3e-11 74.3 36 91.7
THA.LOC104825723 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 1.3e-11 74.3 36 88.9
Actinidia11768 Actinidia chinensis HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
Dinv16559 Davidia involucrata HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
Dinv27411 Davidia involucrata HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
Eucgr.G02395 Eucalyptus grandis HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
Manes.14G094200 Manihot esculenta HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
Oeu054562.1 Olea europaea HOM05D003083 ORTHO05D003466 1.6e-11 73.9 37 86.5
PSO013G0209 Papaver somniferum HOM05D003083 ORTHO05D003466 1.6e-11 73.9 37 83.8
PSO832G2172 Papaver somniferum HOM05D003083 ORTHO05D003466 1.6e-11 73.9 37 83.8
Rhsim11G0182800 Rhododendron simsii HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
Thecc.02G315000 Theobroma cacao HOM05D003083 ORTHO05D003466 1.6e-11 73.9 36 88.9
BcaB07g30267 Brassica carinata HOM05D003083 ORTHO05D003466 2.1e-11 73.6 36 88.9
CiPaw.05G118500 Carya illinoinensis HOM05D003083 ORTHO05D003466 2.1e-11 73.6 36 88.9
CsaV3_5G024400 Cucumis sativus L. HOM05D003083 ORTHO05D003466 2.1e-11 73.6 36 88.9
Glyma.12G081900 Glycine max HOM05D003083 ORTHO05D003466 2.1e-11 73.6 36 88.9
Lj4A854T13 Lonicera japonica HOM05D003083 ORTHO05D003466 2.1e-11 73.6 36 86.1
Atru.chr11.1449 Acer truncatum HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
Atru.chr11.1479 Acer truncatum HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
A02p33890 Brassica napus HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
BraA02t08407Z Brassica rapa HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
Gohir.A13G092200 Gossypium hirsutum HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
Gorai.013G102300 Gossypium raimondii HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
RcHm_v2.0_Chr4g0436691 Rosa chinensis HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 88.9
Sed0015771 Sechium edule HOM05D003083 ORTHO05D003466 2.8e-11 73.2 36 86.1
TAR374G1204 Trochodendron aralioides HOM05D003083 ORTHO05D003466 2.8e-11 73.2 59 59.3
GSVIVG01010154001 Vitis vinifera HOM05D003083 ORTHO05D003466 2.8e-11 73.2 37 83.8
Ca_14133_v3 Cicer arietinum L. HOM05D003083 ORTHO05D003466 3.6e-11 72.8 34 91.2
ECA238G1707 Erigeron canadensis HOM05D003083 ORTHO05D003466 3.6e-11 72.8 36 86.1
Sc04g0007060 Simmondsia chinensis HOM05D003083 ORTHO05D003466 3.6e-11 72.8 36 88.9
Lalb_Chr08g0245781 Lupinus albus HOM05D003083 ORTHO05D003466 4.8e-11 72.4 36 88.9
Manes.06G076700 Manihot esculenta HOM05D003083 ORTHO05D003466 4.8e-11 72.4 36 86.1
Prupe.7G262100 Prunus persica HOM05D003083 ORTHO05D003466 4.8e-11 72.4 36 86.1
PGR119G0526 Punica granatum HOM05D003083 ORTHO05D003466 4.8e-11 72.4 36 86.1
TWI31G0301 Tripterygium wilfordii HOM05D003083 ORTHO05D003466 4.8e-11 72.4 36 83.3
Cpa.g.sc1.262 Carica papaya HOM05D003083 ORTHO05D003466 6.2e-11 72.0 37 83.8
CsaV3_1G013550 Cucumis sativus L. HOM05D003083 ORTHO05D003466 6.2e-11 72.0 36 86.1
Lj2P592T23 Lonicera japonica HOM05D003083 ORTHO05D003466 6.2e-11 72.0 35 85.7
Potri.008G109833 Populus trichocarpa HOM05D003083 ORTHO05D003466 6.2e-11 72.0 36 83.3
Potri.T031036 Populus trichocarpa HOM05D003083 ORTHO05D003466 6.2e-11 72.0 36 83.3
Sed0009989 Sechium edule HOM05D003083 ORTHO05D003466 6.2e-11 72.0 37 81.1
THA.LOC104824047 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 6.2e-11 72.0 36 86.1
unitig_62.g23706 Utricularia gibba HOM05D003083 ORTHO05D003466 6.2e-11 72.0 37 81.1
vmacro02058 Vaccinium macrocarpon HOM05D003083 ORTHO05D003466 6.2e-11 72.0 36 86.1
HanXRQChr11g0342141 Helianthus annuus HOM05D003083 ORTHO05D003466 8.1e-11 71.6 36 83.3
Lalb_Chr17g0341721 Lupinus albus HOM05D003083 ORTHO05D003466 8.1e-11 71.6 35 85.7
AL5G14090 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 1.1e-10 71.2 36 86.1
CANSAT64G1145 Cannabis sativa HOM05D003083 ORTHO05D003466 1.1e-10 71.2 39 79.5
Carub.0005s0335 Capsella rubella HOM05D003083 ORTHO05D003466 1.1e-10 71.2 36 86.1
CARHR146560 Cardamine hirsuta HOM05D003083 ORTHO05D003466 1.1e-10 71.2 36 86.1
Lsat_1_v5_gn_2_104520 Lactuca sativa HOM05D003083 ORTHO05D003466 1.1e-10 71.2 36 83.3
Duzib248G0341 Durio zibethinus HOM05D003083 ORTHO05D003466 1.4e-10 70.9 36 86.1
HanXRQChr11g0321311 Helianthus annuus HOM05D003083 ORTHO05D003466 1.4e-10 70.9 36 83.3
Medtr3g009730 Medicago truncatula HOM05D003083 ORTHO05D003466 1.4e-10 70.9 33 93.9
PGR102G0378 Punica granatum HOM05D003083 ORTHO05D003466 1.4e-10 70.9 37 81.1
SHI34639 Sapria himalayana HOM05D003083 ORTHO05D003466 1.4e-10 70.9 37 78.4
MD16G1057500 Malus domestica HOM05D003083 ORTHO05D003466 1.8e-10 70.5 35 85.7
vmacro01278 Vaccinium macrocarpon HOM05D003083 ORTHO05D003466 1.8e-10 70.5 36 83.3
Aa31LG1G1360 Aethionema arabicum HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 83.3
BcaB08g34312 Brassica carinata HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 83.3
BcaC03g17272 Brassica carinata HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 83.3
C02p52160 Brassica napus HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 83.3
BolC2t11301H Brassica oleracea HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 83.3
CSS0044755 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 86.1
CsaV3_5G033710 Cucumis sativus L. HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 86.1
ECA232G3768 Erigeron canadensis HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 80.6
Gohir.D05G307500 Gossypium hirsutum HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 80.6
Gorai.009G327500 Gossypium raimondii HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 80.6
Lalb_Chr04g0255241 Lupinus albus HOM05D003083 ORTHO05D003466 2.4e-10 70.1 36 83.3
SEGI_32048 Sequoiadendron giganteum HOM05D003083 ORTHO05D003466 2.4e-10 70.1 37 81.1
Os02g0119800 Oryza sativa ssp. japonica HOM05D003083 ORTHO05D003466 3.1e-10 69.7 36 80.6
Sed0026832 Sechium edule HOM05D003083 ORTHO05D003466 3.1e-10 69.7 36 86.1
Zm00001eb230240 Zea mays HOM05D003083 ORTHO05D003466 3.1e-10 69.7 36 83.3
MD12G1007000 Malus domestica HOM05D003083 ORTHO05D003466 5.3e-10 68.9 35 82.9
Os06g0204400 Oryza sativa ssp. japonica HOM05D003083 ORTHO05D003466 5.3e-10 68.9 37 78.4
arahy.Tifrunner.gnm1.ann1.FB1FM8 Arachis hypogaea HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 83.3
arahy.Tifrunner.gnm1.ann1.MMN7ZE Arachis hypogaea HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 83.3
BcaC07g41635 Brassica carinata HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 80.6
A09p62930 Brassica napus HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 80.6
C08p46370 Brassica napus HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 80.6
BolC1t01144H Brassica oleracea HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 80.6
BolC8t52186H Brassica oleracea HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 80.6
BraA09t41651Z Brassica rapa HOM05D003083 ORTHO05D003466 6.9e-10 68.6 36 80.6
CDE01G0472 Ceratophyllum demersum HOM05D003083 ORTHO05D003466 9.0e-10 68.2 36 80.6
CDE12G0871 Ceratophyllum demersum HOM05D003083 ORTHO05D003466 9.0e-10 68.2 36 80.6
Ciclev10031785m.g Citrus clementina HOM05D003083 ORTHO05D003466 9.0e-10 68.2 36 83.3
Hund25153 Selenicereus undatus HOM05D003083 ORTHO05D003466 9.0e-10 68.2 39 76.9
Gohir.A04G144900 Gossypium hirsutum HOM05D003083 ORTHO05D003466 1.5e-09 67.4 36 80.6
Gorai.012G184700 Gossypium raimondii HOM05D003083 ORTHO05D003466 1.5e-09 67.4 36 80.6
Lj2g0013424 Lotus japonicus HOM05D003083 ORTHO05D003466 2.0e-09 67.0 36 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1877 Anthoceros agrestis HOM05D003083 ORTHO05D003466 3.4e-09 66.2 36 77.8
Gohir.D04G189400 Gossypium hirsutum HOM05D003083 ORTHO05D003466 5.8e-09 65.5 36 77.8
Mapoly0173s0008 Marchantia polymorpha HOM05D003083 ORTHO05D003466 5.8e-09 65.5 37 78.4
ATR0580G393 Amborella trichopoda HOM05D003083 ORTHO05D003466 7.6e-09 65.1 37 73.0
Zm00001eb278650 Zea mays HOM05D003083 ORTHO05D003466 1.3e-08 64.3 37 73.0
Duzib268G0194 Durio zibethinus HOM05D003083 ORTHO05D003466 8.4e-08 61.6 36 75.0
SMO367G0966 Selaginella moellendorffii HOM05D003083 ORTHO05D003466 3.2e-07 59.7 34 73.5
VMungo1127G0992 Vigna mungo HOM05D003083 ORTHO05D003466 1.6e-06 57.4 29 82.8


User provided reference genes

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