Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.5e-172 609.4 294 100.0
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 5.3e-146 521.2 319 77.4
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 3.4e-145 518.5 319 76.5
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.2e-142 510.0 317 77.9
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.9e-129 464.5 317 71.6
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.0e-128 463.8 317 71.3
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 2.9e-128 462.2 318 72.0
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.2e-127 458.8 317 70.0
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 9.4e-127 457.2 318 69.8
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.1e-124 450.3 317 69.1
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.4e-124 448.4 284 76.4
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.4e-124 448.4 313 69.6
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 5.7e-124 448.0 317 67.8
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.4e-122 443.4 317 67.5
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.8e-122 443.0 317 67.5
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 5.3e-122 441.4 319 67.4
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.0e-122 441.0 320 66.2
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 9.1e-122 440.7 317 66.6
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.6e-121 439.9 317 66.2
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.0e-120 437.2 319 66.5
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.7e-120 436.4 320 65.6
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.2e-120 436.0 317 66.9
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.2e-120 436.0 320 65.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 2.9e-120 435.6 324 66.0
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.9e-120 435.6 319 65.2
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.8e-120 435.3 317 66.2
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.8e-120 435.3 317 65.3
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.9e-119 433.0 317 67.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.2e-119 431.8 318 64.8
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 5.5e-119 431.4 318 66.0
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.6e-118 429.9 318 65.7
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.6e-118 429.9 317 64.0
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.6e-118 429.9 318 67.0
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 8.0e-118 427.6 317 65.6
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 5.2e-117 424.9 318 66.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 1.2e-116 423.7 317 64.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.6e-116 422.5 319 64.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.4e-116 422.2 317 64.0
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 7.5e-116 421.0 317 64.7
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 7.5e-116 421.0 319 64.3
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 9.8e-116 420.6 317 64.0
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 9.8e-116 420.6 321 62.6
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.3e-115 420.2 319 64.6
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.7e-115 419.9 318 64.2
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.7e-115 419.9 319 63.9
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.2e-115 419.5 319 62.4
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-115 418.7 319 64.6
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 4.8e-115 418.3 304 67.1
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.8e-115 418.3 319 63.3
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 4.8e-115 418.3 317 64.0
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.1e-114 417.2 317 64.0
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.8e-114 416.4 332 61.1
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.8e-114 416.4 317 63.7
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.8e-114 416.4 317 64.7
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.1e-114 415.6 321 62.3
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.1e-114 415.2 317 63.4
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.1e-114 415.2 318 63.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 7.0e-114 414.5 320 63.8
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 7.0e-114 414.5 316 63.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 9.1e-114 414.1 370 57.3
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 9.1e-114 414.1 369 58.0
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.2e-113 413.7 318 63.5
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.2e-113 413.7 339 59.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.6e-113 413.3 317 63.1
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.6e-113 413.3 317 62.5
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.0e-113 412.9 317 63.4
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.0e-113 412.9 293 65.2
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.0e-113 412.9 315 63.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.0e-113 412.9 318 63.5
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.5e-113 412.1 317 63.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 3.5e-113 412.1 321 62.6
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 4.5e-113 411.8 317 63.4
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 5.9e-113 411.4 317 63.4
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 3.8e-112 408.7 317 62.5
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.8e-112 408.7 317 62.8
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.8e-112 408.7 317 62.8
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.0e-112 408.3 317 63.1
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.5e-111 406.0 318 60.7
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.2e-111 405.6 318 60.7
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 5.5e-111 404.8 317 61.2
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 7.2e-111 404.4 318 62.3
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.2e-110 403.7 318 61.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.6e-110 403.3 319 61.8
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.6e-110 403.3 319 61.8
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.6e-110 402.1 320 62.8
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 3.6e-110 402.1 317 61.8
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 3.6e-110 402.1 317 60.6
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 3.6e-110 402.1 324 60.5
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 3.6e-110 402.1 317 61.5
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 6.1e-110 401.4 317 61.5
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 6.1e-110 401.4 318 60.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 8.0e-110 401.0 317 63.4
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-109 400.6 319 61.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.8e-109 399.8 317 61.2
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.8e-109 399.8 317 61.2
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.3e-109 399.4 319 61.4
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.0e-109 398.7 317 61.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 6.8e-109 397.9 319 61.1
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 8.8e-109 397.5 317 61.2
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.8e-109 397.5 319 61.8
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.0e-108 396.4 317 61.2
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.0e-108 396.4 319 61.8
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.6e-108 396.0 319 60.8
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.6e-108 396.0 324 59.3
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.6e-108 396.0 320 59.4
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.4e-108 395.2 319 61.1
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.3e-107 393.7 317 60.3
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.7e-107 393.3 317 60.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.7e-107 393.3 317 62.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.2e-107 392.9 319 60.8
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 6.3e-107 391.3 317 59.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 6.3e-107 391.3 309 62.5
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 8.3e-107 391.0 319 61.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.1e-106 389.0 317 59.6
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.1e-106 389.0 301 64.5
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.7e-105 386.0 391 51.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.3e-103 379.0 317 59.6
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-102 377.1 319 60.5
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.1e-102 376.3 317 59.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.6e-100 369.4 289 62.3
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.7e-100 368.2 298 63.1
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.7e-99 365.5 294 58.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 4.1e-98 362.1 338 55.0
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.2e-98 360.9 405 47.9
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.0e-96 357.5 326 55.8
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 7.3e-95 351.3 274 64.6
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 4.4e-92 342.0 268 63.1
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 4.9e-91 338.6 298 55.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 4.9e-91 338.6 334 53.9
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.7e-88 330.1 296 56.1
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 8.6e-88 327.8 319 54.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 8.6e-88 327.8 319 51.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.1e-86 323.2 323 50.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-84 317.4 321 51.4
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.6e-84 316.2 323 52.0
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.4e-77 293.9 205 67.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 7.6e-76 288.1 223 64.1
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 2.9e-75 286.2 353 44.2
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.9e-75 286.2 270 54.4
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.9e-74 283.5 201 66.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 4.6e-73 278.9 186 69.9
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.1e-70 270.0 220 60.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.0e-69 265.8 182 69.2
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 5.6e-63 245.4 166 70.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.4e-61 240.7 283 50.2
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-60 237.7 185 62.7
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 6.0e-57 225.3 152 69.7
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 4.0e-53 212.6 146 71.2
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.2e-43 180.3 147 57.1
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.8e-40 170.6 140 60.7
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 9.0e-37 158.3 131 60.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 5.5e-34 149.1 95 68.4
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.3e-32 144.4 109 60.6
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.5e-28 131.0 75 73.3
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.5e-28 131.0 91 65.9
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 7.7e-28 128.6 75 73.3
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.5e-27 125.2 178 41.6
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-26 124.8 101 62.4
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.1e-26 124.8 93 59.1
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 1.4e-24 117.9 76 69.7
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 7.4e-23 112.1 140 42.9
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 9.7e-23 111.7 67 68.7
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 7.9e-17 92.0 58 67.2
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 4.4e-15 86.3 67 61.2
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.2e-14 84.0 73 56.2
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 9.4e-10 68.6 42 66.7
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.4e-08 64.7 51 54.9
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 3.0e-08 63.5 71 53.5
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.8e-08 62.0 81 49.4
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 5.7e-07 59.3 56 55.4
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 2.8e-06 57.0 40 67.5


User provided reference genes

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