Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 5.0e-171 604.4 311 100.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 4.8e-121 438.3 311 76.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.3e-115 420.2 311 74.3
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 2.0e-111 406.4 313 69.0
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.6e-111 406.0 307 71.0
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 5.9e-111 404.8 304 69.7
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.0e-110 404.1 306 70.3
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 3.8e-110 402.1 295 72.2
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.1e-109 400.6 301 71.1
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.2e-109 399.1 296 72.0
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 3.2e-109 399.1 312 67.0
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 3.6e-108 395.6 298 70.1
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.0e-107 394.0 304 69.7
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-107 393.3 292 71.6
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.8e-107 393.3 305 68.9
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 5.1e-107 391.7 292 71.2
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 6.7e-107 391.3 306 69.0
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.1e-106 390.6 303 70.3
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.0e-106 389.8 329 66.0
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.0e-106 389.8 293 70.3
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.5e-106 389.4 310 66.8
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.5e-106 389.4 305 68.2
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.5e-106 389.4 302 68.9
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.5e-106 389.4 305 68.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.7e-106 388.3 311 67.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.4e-106 387.9 285 71.9
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 9.7e-106 387.5 295 69.2
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 9.7e-106 387.5 307 67.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.3e-105 387.1 301 69.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.7e-105 386.7 307 68.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.8e-105 386.0 294 69.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 2.8e-105 386.0 294 68.7
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 6.3e-105 384.8 290 71.0
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 8.2e-105 384.4 311 67.2
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.1e-104 384.0 297 69.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.8e-104 383.3 307 66.1
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 4.1e-104 382.1 299 66.6
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 5.3e-104 381.7 307 65.8
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 6.9e-104 381.3 304 68.4
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 9.1e-104 380.9 264 75.0
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.2e-103 380.6 252 76.2
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.6e-103 379.4 304 67.8
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.4e-103 379.0 298 69.5
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 5.9e-103 378.3 294 69.0
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 7.7e-103 377.9 294 70.1
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.0e-102 377.5 279 71.3
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.0e-102 377.5 310 67.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.3e-102 377.1 296 68.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 8.5e-102 374.4 277 70.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.9e-101 373.2 290 69.0
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.9e-101 373.2 313 67.4
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.9e-101 373.2 316 67.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 7.2e-101 371.3 311 65.3
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 9.4e-101 370.9 252 75.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 3.6e-100 369.0 295 66.8
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.7e-100 368.6 290 67.9
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.1e-100 368.2 271 70.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 7.9e-100 367.9 306 65.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-99 367.5 310 65.2
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.8e-99 366.7 320 63.1
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.9e-99 365.5 307 65.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 6.7e-99 364.8 262 71.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 8.8e-99 364.4 302 65.2
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-98 363.6 306 65.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.0e-98 363.2 310 64.5
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 4.4e-98 362.1 306 65.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 5.7e-98 361.7 306 64.1
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 7.4e-98 361.3 310 64.5
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 7.4e-98 361.3 262 72.1
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 7.4e-98 361.3 283 68.6
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.2e-97 359.8 305 64.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 2.8e-97 359.4 315 62.9
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.7e-97 359.0 305 64.6
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.3e-97 358.2 325 60.6
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.1e-96 357.5 238 77.7
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.1e-96 355.9 237 75.5
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 9.1e-96 354.4 294 66.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.3e-91 339.7 291 62.2
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 5.2e-91 338.6 266 66.5
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 8.8e-91 337.8 269 66.2
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.5e-90 337.0 291 63.6
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.4e-88 329.7 269 63.6
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 5.3e-88 328.6 310 61.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.1e-88 327.8 250 67.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.0e-87 326.6 271 64.9
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 5.9e-87 325.1 280 65.4
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-86 324.3 269 64.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 6.5e-86 321.6 291 61.5
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.1e-85 320.9 253 65.6
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-85 320.1 269 63.9
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.5e-85 319.7 235 68.5
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 9.4e-85 317.8 355 53.2
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 8.0e-84 314.7 237 69.6
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.6e-82 309.7 210 73.8
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.7e-81 307.0 306 58.2
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 3.7e-81 305.8 289 60.2
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.1e-80 302.8 214 72.4
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 7.2e-77 291.6 247 63.2
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 3.6e-76 289.3 216 69.0
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 4.4e-74 282.3 186 75.3
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 5.7e-74 282.0 228 65.8
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 8.3e-73 278.1 306 54.2
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 4.1e-72 275.8 213 66.7
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.2e-69 265.0 194 70.6
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.6e-68 263.8 259 57.9
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 7.5e-66 255.0 270 51.9
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 3.4e-58 229.6 237 54.9
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.4e-58 229.6 269 46.8
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 3.2e-56 223.0 247 47.4
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 6.0e-55 218.8 270 46.3
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 4.7e-52 209.1 212 55.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-47 194.1 237 50.2
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-46 190.7 185 54.1
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.9e-43 178.3 144 68.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 7.3e-37 158.7 290 40.3
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.9e-33 146.0 88 79.5
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.1e-29 134.8 90 76.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-28 131.0 128 62.5
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-25 121.3 128 58.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 2.7e-23 113.6 73 79.5
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-22 110.5 93 57.0
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 3.0e-22 110.2 128 54.7
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 6.6e-22 109.0 125 54.4
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 4.3e-21 106.3 89 67.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 6.2e-20 102.4 96 55.2
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-19 101.3 188 36.7
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.8e-19 100.9 144 48.6
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-19 100.9 81 64.2
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.9e-16 90.9 199 35.2
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 6.0e-15 85.9 77 59.7
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 7.9e-15 85.5 50 76.0
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.9e-13 80.9 51 76.5
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 9.6e-13 78.6 102 46.1
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-12 78.2 50 76.0
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-12 78.2 50 76.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 3.7e-12 76.6 213 35.2
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.7e-12 76.6 263 27.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-11 74.7 59 55.9
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-11 74.3 97 46.4
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 3.1e-11 73.6 45 75.6
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 2.6e-10 70.5 93 46.2
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 7.6e-10 68.9 43 79.1
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.7e-09 67.8 56 67.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 8.4e-09 65.5 93 50.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-08 64.7 58 58.6


User provided reference genes

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