Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 7.2e-64 247.3 144 100.0
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 2.4e-51 205.7 145 82.1
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.5e-50 201.8 141 78.7
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.1e-46 190.3 124 77.4
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.7e-44 183.0 149 72.5
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.2e-42 176.8 147 70.7
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.0e-41 173.7 110 72.7
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.3e-41 172.6 112 72.3
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.9e-40 169.5 147 58.5
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 7.3e-40 167.5 115 69.6
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 7.3e-40 167.5 110 69.1
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 9.5e-40 167.2 110 69.1
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.2e-39 166.8 113 69.9
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 4.7e-39 164.9 113 69.0
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.1e-38 163.7 115 67.8
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.1e-38 163.7 113 69.0
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.8e-38 162.9 113 67.3
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.3e-38 162.5 113 69.0
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.3e-38 162.5 113 69.0
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.3e-38 162.5 113 69.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 2.3e-38 162.5 115 67.8
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 3.1e-38 162.2 115 67.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 4.0e-38 161.8 115 67.0
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.2e-38 161.4 115 65.2
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 6.8e-38 161.0 146 56.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.0e-37 159.5 115 66.1
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 2.0e-37 159.5 115 66.1
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.0e-37 159.5 113 66.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.0e-37 159.5 115 65.2
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 2.6e-37 159.1 115 65.2
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 3.4e-37 158.7 113 67.3
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 4.4e-37 158.3 115 66.1
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 5.8e-37 157.9 115 66.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 5.8e-37 157.9 115 65.2
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 7.5e-37 157.5 115 63.5
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 7.5e-37 157.5 115 66.1
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 7.5e-37 157.5 113 65.5
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 9.9e-37 157.1 115 65.2
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 9.9e-37 157.1 113 65.5
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.3e-36 156.8 115 63.5
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.3e-36 156.8 115 65.2
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.7e-36 156.4 113 64.6
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.7e-36 156.4 113 64.6
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 2.2e-36 156.0 115 65.2
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 3.7e-36 155.2 115 66.1
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 4.9e-36 154.8 115 65.2
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.4e-36 154.5 120 62.5
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 8.3e-36 154.1 115 63.5
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 8.3e-36 154.1 112 66.1
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.1e-35 153.7 138 55.8
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.1e-35 153.7 138 55.8
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.4e-35 153.3 115 62.6
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.4e-35 153.3 113 61.9
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.4e-35 153.3 113 63.7
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.4e-35 153.3 117 63.2
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.9e-35 152.9 112 65.2
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 3.2e-35 152.1 113 66.4
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 4.1e-35 151.8 113 64.6
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 4.1e-35 151.8 115 60.0
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.1e-35 151.8 113 62.8
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 5.4e-35 151.4 113 62.8
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 5.4e-35 151.4 115 61.7
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 7.1e-35 151.0 113 61.1
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.6e-34 149.8 144 54.9
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.1e-34 149.4 116 62.9
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.1e-34 149.4 112 64.3
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 2.7e-34 149.1 121 61.2
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 2.7e-34 149.1 111 66.7
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.7e-34 149.1 115 60.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.7e-34 149.1 90 75.6
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 4.6e-34 148.3 113 63.7
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 4.6e-34 148.3 125 60.8
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 6.0e-34 147.9 113 63.7
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 7.8e-34 147.5 128 57.0
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 7.8e-34 147.5 128 57.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-33 146.7 120 61.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.3e-33 146.7 120 61.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.3e-33 146.7 114 61.4
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.0e-33 145.6 113 61.1
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 8.6e-33 144.1 126 56.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-32 143.7 128 57.8
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 4.3e-32 141.7 113 57.5
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.3e-32 141.7 88 73.9
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 5.6e-32 141.4 141 53.2
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 7.3e-32 141.0 121 57.9
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 9.5e-32 140.6 113 58.4
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.2e-31 140.2 112 60.7
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.2e-31 140.2 115 59.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.1e-31 139.4 142 54.2
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 2.8e-31 139.0 113 58.4
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 3.6e-31 138.7 127 55.1
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 8.1e-31 137.5 99 65.7
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.8e-30 136.3 113 57.5
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.0e-29 132.9 142 50.0
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.4e-29 132.1 142 50.0
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.4e-29 131.7 149 46.3
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 5.8e-29 131.3 113 57.5
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 5.8e-29 131.3 96 61.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.4e-28 127.9 85 67.1
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.1e-27 127.1 170 42.4
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 3.2e-27 125.6 107 57.0
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.1e-27 124.4 113 56.6
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.6e-26 123.2 84 69.0
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.0e-26 121.3 113 55.8
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.7e-25 119.8 97 55.7
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 3.9e-25 118.6 106 51.9
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 8.7e-25 117.5 135 45.2
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-24 117.1 112 53.6
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.1e-24 117.1 106 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.5e-24 116.7 100 57.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.5e-24 116.7 115 54.8
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.9e-24 116.3 112 53.6
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 7.3e-24 114.4 115 53.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.2e-23 113.6 100 55.0
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.6e-23 113.2 120 50.8
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 3.6e-23 112.1 115 50.4
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.7e-23 111.7 129 51.9
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.1e-22 110.5 70 70.0
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.1e-22 110.5 70 68.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.8e-22 109.8 120 52.5
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.4e-22 109.4 97 50.5
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 5.4e-19 98.2 69 62.3
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 9.3e-19 97.4 70 60.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-15 87.0 83 51.8
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.5e-13 80.1 66 53.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 6.0e-10 68.2 51 56.9
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 7.9e-10 67.8 80 47.5
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.0e-09 67.4 61 57.4
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 8.7e-09 64.3 49 57.1
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.3e-07 60.5 51 49.0


User provided reference genes

Program Settings